Search results for the GEO ID: GSE22771  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM563179 | GPL570 |
|
NBL 1 cell line
|
NBL cell line 1
|
cell type: neuroblastoma cell line
gender: female
mycn status: no MYCN amplification
alk mutation status: wild type
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563179
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563179/suppl/GSM563179.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563179/suppl/GSM563179.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563180 | GPL570 |
|
NBL 2 cell line
|
NBL cell line 2
|
cell type: neuroblastoma cell line
gender: male
mycn status: no MYCN amplification
alk mutation status: mutated
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563180
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Nov 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563180/suppl/GSM563180.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563180/suppl/GSM563180.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_data_row_count | 54675
| | |
|
GSM563181 | GPL570 |
|
NBL 3 cell line
|
NBL cell line 3
|
cell type: neuroblastoma cell line
gender: female
mycn status: no MYCN amplification
alk mutation status: wild type
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563181
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563181/suppl/GSM563181.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563181/suppl/GSM563181.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563182 | GPL570 |
|
NBL 4 cell line
|
NBL cell line 4
|
cell type: neuroblastoma cell line
gender: male
mycn status: MYCN amplified
alk mutation status: wild type
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563182
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563182/suppl/GSM563182.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563182/suppl/GSM563182.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563183 | GPL570 |
|
NBL 5 cell line
|
NBL cell line 5
|
cell type: neuroblastoma cell line
gender: male
mycn status: MYCN amplified
alk mutation status: mutated
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563183
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563183/suppl/GSM563183.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563183/suppl/GSM563183.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563184 | GPL570 |
|
NBL 6 cell line
|
NBL cell line 6
|
cell type: neuroblastoma cell line
gender: male
mycn status: MYCN amplified
alk mutation status: mutated
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563184
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563184/suppl/GSM563184.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563184/suppl/GSM563184.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563185 | GPL570 |
|
NBL 7 cell line
|
NBL cell line 7
|
cell type: neuroblastoma cell line
gender: female
mycn status: MYCN amplified
alk mutation status: mutated
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563185
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563185/suppl/GSM563185.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563185/suppl/GSM563185.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563186 | GPL570 |
|
NBL 8 cell line
|
NBL cell line 8
|
cell type: neuroblastoma cell line
gender: male
mycn status: MYCN amplified
alk mutation status: wild type
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563186
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563186/suppl/GSM563186.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563186/suppl/GSM563186.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563187 | GPL570 |
|
NBL 9 cell line
|
NBL cell line 9
|
cell type: neuroblastoma cell line
gender: female
mycn status: MYCN amplified
alk mutation status: amplified
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563187
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563187/suppl/GSM563187.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563187/suppl/GSM563187.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563188 | GPL570 |
|
NBL 10 cell line
|
Derivative NBL16
|
cell type: derivative of neuroblastoma cell line NBL16
gender: female
mycn status: no MYCN amplification
alk mutation status: mutated
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563188
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563188/suppl/GSM563188.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563188/suppl/GSM563188.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563189 | GPL570 |
|
NBL 11 cell line
|
Derivative NBL16
|
cell type: derivative of neuroblastoma cell line NBL16
gender: female
mycn status: no MYCN amplification
alk mutation status: mutated
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563189
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563189/suppl/GSM563189.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563189/suppl/GSM563189.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563190 | GPL570 |
|
NBL 12 cell line
|
NBL cell line 12
|
cell type: neuroblastoma cell line
gender: male
mycn status: no MYCN amplification
alk mutation status: wild type
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563190
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563190/suppl/GSM563190.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563190/suppl/GSM563190.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563191 | GPL570 |
|
NBL 13 cell line
|
NBL cell line 13
|
cell type: neuroblastoma cell line
gender: female
mycn status: MYCN amplified
alk mutation status: wild type
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563191
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563191/suppl/GSM563191.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563191/suppl/GSM563191.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563192 | GPL570 |
|
NBL 14 cell line
|
NBL cell line 14
|
cell type: neuroblastoma cell line
gender: male
mycn status: MYCN amplified
alk mutation status: wild type
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563192
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563192/suppl/GSM563192.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563192/suppl/GSM563192.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563193 | GPL570 |
|
NBL 15 cell line
|
NBL cell line 15
|
cell type: neuroblastoma cell line
gender: female
mycn status: MYCN amplified
alk mutation status: amplified
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563193
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563193/suppl/GSM563193.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563193/suppl/GSM563193.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563194 | GPL570 |
|
NBL 16 cell line
|
NBL cell line 16
|
cell type: neuroblastoma cell line
gender: female
mycn status: no MYCN amplification
alk mutation status: mutated
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563194
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563194/suppl/GSM563194.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563194/suppl/GSM563194.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
GSM563195 | GPL570 |
|
NBL 17 cell line
|
NBL cell line 17
|
cell type: neuroblastoma cell line
gender: female
mycn status: MYCN amplified
alk mutation status: amplified
|
Gene expression data of neuroblastoma cell line
|
| Sample_geo_accession | GSM563195
| | Sample_status | Public on Jul 07 2011
| | Sample_submission_date | Jul 06 2010
| | Sample_last_update_date | Jan 20 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cultured in DMEM or RPMI at 37 C and 5% CO2 in non-hypoxic conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix HGU 133 Plus2.0 arrays. GeneChips were washed and stained according to Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling (TGT value 500) as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Floor,,Duijkers
| | Sample_contact_department | Pediatric Oncology-Hematology
| | Sample_contact_institute | Erasmus MC
| | Sample_contact_address | Dr. Molewaterplein 50-60 Ee15-02
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563195/suppl/GSM563195.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563195/suppl/GSM563195.CHP.gz
| | Sample_series_id | GSE22771
| | Sample_series_id | GSE33903
| | Sample_series_id | GSE35218
| | Sample_series_id | GSE35798
| | Sample_data_row_count | 54675
| | |
|
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(2 groups will be compared at a time) |
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