Search results for the GEO ID: GSE22781  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM563321 | GPL570 |
|
Renal Cell Carcinoma Cell line SN12C19
|
Renal Carcinoma Cell line
|
cell line: SN12C19
|
Gene expression data from human renal cancer cell line SN12C19
|
| Sample_geo_accession | GSM563321
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Jul 07 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from cultured renal carcinoma cells using a miRNeasy Mini Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling was performed using established Affymetrix protocols.
| | Sample_hyb_protocol | Hybridization was performed using established Affymetrix protocols.
| | Sample_scan_protocol | Scanning was performed as recommended by Affymetrix protocols.
| | Sample_data_processing | Probe normalization and summarization was performed using the PerfectMatch software suite utilizing the PDNN algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nanyue,,Chen
| | Sample_contact_institute | UT MD Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563321/suppl/GSM563321.CEL.gz
| | Sample_series_id | GSE22781
| | Sample_data_row_count | 54675
| | |
|
GSM563322 | GPL570 |
|
Renal Cell Carcinoma Cell line SN19(3i)YY
|
Renal Carcinoma Cell line
|
cell line: SN19(3i)YY
|
Gene expression data from human renal cancer cell line SN19(3i)YY containing an introduced normal chromosome 3P fragment which suppressed tumorigenicity in athymic nude mice
|
| Sample_geo_accession | GSM563322
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Jul 07 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from cultured renal carcinoma cells using a miRNeasy Mini Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeling was performed using established Affymetrix protocols.
| | Sample_hyb_protocol | Hybridization was performed using established Affymetrix protocols.
| | Sample_scan_protocol | Scanning was performed as recommended by Affymetrix protocols.
| | Sample_data_processing | Probe normalization and summarization was performed using the PerfectMatch software suite utilizing the PDNN algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Nanyue,,Chen
| | Sample_contact_institute | UT MD Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM563nnn/GSM563322/suppl/GSM563322.CEL.gz
| | Sample_series_id | GSE22781
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
| Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
| Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
| |
Filter results by number of probes |
|
|
