Search results for the GEO ID: GSE22842  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM564579 | GPL570 |
|
control, 1
|
osteosarcoma cell line SAOS, wild type
|
cell line: SAOS
cell type: osteosarcoma
genotype: wild type
transient transfection: none
|
Non-transformed SAOS cells.
|
| Sample_geo_accession | GSM564579
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM564nnn/GSM564579/suppl/GSM564579.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM564nnn/GSM564579/suppl/GSM564579.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM564580 | GPL570 |
|
rb, 1
|
osteosarcoma cell line SAOS, RB
|
cell line: SAOS
cell type: osteosarcoma
transient transfection: human RB1
|
SAOS cells transiently transfected with human RB.
|
| Sample_geo_accession | GSM564580
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM564nnn/GSM564580/suppl/GSM564580.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM564nnn/GSM564580/suppl/GSM564580.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM564581 | GPL570 |
|
smyd, 1
|
osteosarcoma cell line SAOS, SMYD2
|
cell line: SAOS
cell type: osteosarcoma
transient transfection: mouse SMYD2
|
SAOS cells transiently transfected with mouse SMYD2.
|
| Sample_geo_accession | GSM564581
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM564nnn/GSM564581/suppl/GSM564581.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM564nnn/GSM564581/suppl/GSM564581.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM564582 | GPL570 |
|
rb-smyd, 1
|
osteosarcoma cell line SAOS, RB and SMYD2
|
cell line: SAOS
cell type: osteosarcoma
transient transfection: human RB1 and mouse SMYD2
|
SAOS cells transiently transfected with human RB and mouse SMYD2.
|
| Sample_geo_accession | GSM564582
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM564nnn/GSM564582/suppl/GSM564582.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM564nnn/GSM564582/suppl/GSM564582.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM565160 | GPL570 |
|
control, 3
|
osteosarcoma cell line SAOS, wild type
|
cell line: SAOS
cell type: osteosarcoma
genotype: wild type
transient transfection: none
|
Non-transformed SAOS cells.
|
| Sample_geo_accession | GSM565160
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565160/suppl/GSM565160.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565160/suppl/GSM565160.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM565161 | GPL570 |
|
control, 4
|
osteosarcoma cell line SAOS, wild type
|
cell line: SAOS
cell type: osteosarcoma
genotype: wild type
transient transfection: none
|
Non-transformed SAOS cells.
|
| Sample_geo_accession | GSM565161
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565161/suppl/GSM565161.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565161/suppl/GSM565161.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM565162 | GPL570 |
|
control, 5
|
osteosarcoma cell line SAOS, wild type
|
cell line: SAOS
cell type: osteosarcoma
genotype: wild type
transient transfection: none
|
Non-transformed SAOS cells.
|
| Sample_geo_accession | GSM565162
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565162/suppl/GSM565162.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565162/suppl/GSM565162.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM565163 | GPL570 |
|
smyd, 3
|
osteosarcoma cell line SAOS, SMYD2
|
cell line: SAOS
cell type: osteosarcoma
transient transfection: mouse SMYD2
|
SAOS cells transiently transfected with mouse SMYD2.
|
| Sample_geo_accession | GSM565163
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565163/suppl/GSM565163.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565163/suppl/GSM565163.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM565164 | GPL570 |
|
smyd, 4
|
osteosarcoma cell line SAOS, SMYD2
|
cell line: SAOS
cell type: osteosarcoma
transient transfection: mouse SMYD2
|
SAOS cells transiently transfected with mouse SMYD2.
|
| Sample_geo_accession | GSM565164
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565164/suppl/GSM565164.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565164/suppl/GSM565164.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM565165 | GPL570 |
|
smyd, 5
|
osteosarcoma cell line SAOS, SMYD2
|
cell line: SAOS
cell type: osteosarcoma
transient transfection: mouse SMYD2
|
SAOS cells transiently transfected with mouse SMYD2.
|
| Sample_geo_accession | GSM565165
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565165/suppl/GSM565165.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565165/suppl/GSM565165.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM565166 | GPL570 |
|
rb, 3
|
osteosarcoma cell line SAOS, RB
|
cell line: SAOS
cell type: osteosarcoma
transient transfection: human RB1
|
SAOS cells transiently transfected with human RB.
|
| Sample_geo_accession | GSM565166
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565166/suppl/GSM565166.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565166/suppl/GSM565166.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM565167 | GPL570 |
|
rb, 4
|
osteosarcoma cell line SAOS, RB
|
cell line: SAOS
cell type: osteosarcoma
transient transfection: human RB1
|
SAOS cells transiently transfected with human RB.
|
| Sample_geo_accession | GSM565167
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565167/suppl/GSM565167.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565167/suppl/GSM565167.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM565168 | GPL570 |
|
rb, 5
|
osteosarcoma cell line SAOS, RB
|
cell line: SAOS
cell type: osteosarcoma
transient transfection: human RB1
|
SAOS cells transiently transfected with human RB.
|
| Sample_geo_accession | GSM565168
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565168/suppl/GSM565168.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565168/suppl/GSM565168.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM565169 | GPL570 |
|
rb-smyd, 3
|
osteosarcoma cell line SAOS, RB and SMYD2
|
cell line: SAOS
cell type: osteosarcoma
transient transfection: human RB1 and mouse SMYD2
|
SAOS cells transiently transfected with human RB and mouse SMYD2.
|
| Sample_geo_accession | GSM565169
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565169/suppl/GSM565169.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565169/suppl/GSM565169.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM565170 | GPL570 |
|
rb-smyd, 4
|
osteosarcoma cell line SAOS, RB and SMYD2
|
cell line: SAOS
cell type: osteosarcoma
transient transfection: human RB1 and mouse SMYD2
|
SAOS cells transiently transfected with human RB and mouse SMYD2.
|
| Sample_geo_accession | GSM565170
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565170/suppl/GSM565170.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565170/suppl/GSM565170.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
GSM565171 | GPL570 |
|
rb-smyd, 5
|
osteosarcoma cell line SAOS, RB and SMYD2
|
cell line: SAOS
cell type: osteosarcoma
transient transfection: human RB1 and mouse SMYD2
|
SAOS cells transiently transfected with human RB and mouse SMYD2.
|
| Sample_geo_accession | GSM565171
| | Sample_status | Public on Jan 01 2011
| | Sample_submission_date | Jul 09 2010
| | Sample_last_update_date | Jan 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol (Invitrogen) and cleaned using the Qiagen RNeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_hyb_protocol | As recommended by the manufacturer (Affymetrix, Santa Clara).
| | Sample_scan_protocol | Gene Chip Scanner 3000.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julien,,Sage
| | Sample_contact_email | julsage@stanford.edu
| | Sample_contact_phone | (650) 723-5113
| | Sample_contact_laboratory | Sage
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 265 Campus Drive, SIM1 G2078
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305-5457
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565171/suppl/GSM565171.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565171/suppl/GSM565171.chp.gz
| | Sample_series_id | GSE22842
| | Sample_data_row_count | 54675
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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