Search results for the GEO ID: GSE22868 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM565089 | GPL570 |
|
Control, Sample 1
|
45-month-old Slovak child, background PCB exposure
|
ethnicity: Slovak
gender: female
age: 45 months
tissue: blood
exposure: control
|
Gene expression data from a child with background exposure to PCBs.
|
Sample_geo_accession | GSM565089
| Sample_status | Public on Sep 01 2011
| Sample_submission_date | Jul 09 2010
| Sample_last_update_date | Sep 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Child with background PCBs exposure.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Child's blood (2.5cc) was drawn by venipuncture and directly collected in the Collection Tube of PAXgene Blood RNA Kit IVD. Extraction of total RNA was performed by Qiagen PAXgene Blood RNA Kit IVD according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Sisir,K.,Dutta
| Sample_contact_email | sdutta@howard.edu
| Sample_contact_phone | 202-806-6942
| Sample_contact_fax | 202-806-5832
| Sample_contact_laboratory | Molecular Genetics
| Sample_contact_department | Biology
| Sample_contact_institute | Howard University
| Sample_contact_address | 415 College Street, NW
| Sample_contact_city | Washington DC
| Sample_contact_state | DC
| Sample_contact_zip/postal_code | 20059
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565089/suppl/GSM565089.CEL.gz
| Sample_series_id | GSE22868
| Sample_series_id | GSE28805
| Sample_data_row_count | 54675
| |
|
GSM565090 | GPL570 |
|
Control, Sample 2
|
45-month-old Slovak child, background PCB exposure
|
ethnicity: Slovak
gender: female
age: 45 months
tissue: blood
exposure: control
|
Gene expression data from a child with background exposure to PCBs.
|
Sample_geo_accession | GSM565090
| Sample_status | Public on Sep 01 2011
| Sample_submission_date | Jul 09 2010
| Sample_last_update_date | Sep 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Child with background PCBs exposure.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Child's blood (2.5cc) was drawn by venipuncture and directly collected in the Collection Tube of PAXgene Blood RNA Kit IVD. Extraction of total RNA was performed by Qiagen PAXgene Blood RNA Kit IVD according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Sisir,K.,Dutta
| Sample_contact_email | sdutta@howard.edu
| Sample_contact_phone | 202-806-6942
| Sample_contact_fax | 202-806-5832
| Sample_contact_laboratory | Molecular Genetics
| Sample_contact_department | Biology
| Sample_contact_institute | Howard University
| Sample_contact_address | 415 College Street, NW
| Sample_contact_city | Washington DC
| Sample_contact_state | DC
| Sample_contact_zip/postal_code | 20059
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565090/suppl/GSM565090.CEL.gz
| Sample_series_id | GSE22868
| Sample_series_id | GSE28805
| Sample_data_row_count | 54675
| |
|
GSM565091 | GPL570 |
|
Control, Sample 3
|
45-month-old Slovak child, background PCB exposure
|
ethnicity: Slovak
gender: female
age: 45 months
tissue: blood
exposure: control
|
Gene expression data from a child with background exposure to PCBs.
|
Sample_geo_accession | GSM565091
| Sample_status | Public on Sep 01 2011
| Sample_submission_date | Jul 09 2010
| Sample_last_update_date | Sep 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Child with background PCBs exposure.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Child's blood (2.5cc) was drawn by venipuncture and directly collected in the Collection Tube of PAXgene Blood RNA Kit IVD. Extraction of total RNA was performed by Qiagen PAXgene Blood RNA Kit IVD according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Sisir,K.,Dutta
| Sample_contact_email | sdutta@howard.edu
| Sample_contact_phone | 202-806-6942
| Sample_contact_fax | 202-806-5832
| Sample_contact_laboratory | Molecular Genetics
| Sample_contact_department | Biology
| Sample_contact_institute | Howard University
| Sample_contact_address | 415 College Street, NW
| Sample_contact_city | Washington DC
| Sample_contact_state | DC
| Sample_contact_zip/postal_code | 20059
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565091/suppl/GSM565091.CEL.gz
| Sample_series_id | GSE22868
| Sample_series_id | GSE28805
| Sample_data_row_count | 54675
| |
|
GSM565092 | GPL570 |
|
Control, Sample 4
|
45-month-old Slovak child, background PCB exposure
|
ethnicity: Slovak
gender: female
age: 45 months
tissue: blood
exposure: control
|
Gene expression data from a child with background exposure to PCBs.
|
Sample_geo_accession | GSM565092
| Sample_status | Public on Sep 01 2011
| Sample_submission_date | Jul 09 2010
| Sample_last_update_date | Sep 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Child with background PCBs exposure.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Child's blood (2.5cc) was drawn by venipuncture and directly collected in the Collection Tube of PAXgene Blood RNA Kit IVD. Extraction of total RNA was performed by Qiagen PAXgene Blood RNA Kit IVD according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Sisir,K.,Dutta
| Sample_contact_email | sdutta@howard.edu
| Sample_contact_phone | 202-806-6942
| Sample_contact_fax | 202-806-5832
| Sample_contact_laboratory | Molecular Genetics
| Sample_contact_department | Biology
| Sample_contact_institute | Howard University
| Sample_contact_address | 415 College Street, NW
| Sample_contact_city | Washington DC
| Sample_contact_state | DC
| Sample_contact_zip/postal_code | 20059
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565092/suppl/GSM565092.CEL.gz
| Sample_series_id | GSE22868
| Sample_series_id | GSE28805
| Sample_data_row_count | 54675
| |
|
GSM565093 | GPL570 |
|
Control, Sample 5
|
45-month-old Slovak child, background PCB exposure
|
ethnicity: Slovak
gender: female
age: 45 months
tissue: blood
exposure: control
|
Gene expression data from a child with background exposure to PCBs.
|
Sample_geo_accession | GSM565093
| Sample_status | Public on Sep 01 2011
| Sample_submission_date | Jul 09 2010
| Sample_last_update_date | Sep 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Child with background PCBs exposure.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Child's blood (2.5cc) was drawn by venipuncture and directly collected in the Collection Tube of PAXgene Blood RNA Kit IVD. Extraction of total RNA was performed by Qiagen PAXgene Blood RNA Kit IVD according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Sisir,K.,Dutta
| Sample_contact_email | sdutta@howard.edu
| Sample_contact_phone | 202-806-6942
| Sample_contact_fax | 202-806-5832
| Sample_contact_laboratory | Molecular Genetics
| Sample_contact_department | Biology
| Sample_contact_institute | Howard University
| Sample_contact_address | 415 College Street, NW
| Sample_contact_city | Washington DC
| Sample_contact_state | DC
| Sample_contact_zip/postal_code | 20059
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565093/suppl/GSM565093.CEL.gz
| Sample_series_id | GSE22868
| Sample_series_id | GSE28805
| Sample_data_row_count | 54675
| |
|
GSM565094 | GPL570 |
|
High PCB Exposure, Sample 1
|
45-month-old Slovak child, high PCB exposure
|
ethnicity: Slovak
gender: female
age: 45 months
tissue: blood
exposure: high PCB exposure
|
Gene expression data from a child with high exposure to PCBs.
|
Sample_geo_accession | GSM565094
| Sample_status | Public on Sep 01 2011
| Sample_submission_date | Jul 09 2010
| Sample_last_update_date | Sep 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Child with high PCBs exposure.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Child's blood (2.5cc) was drawn by venipuncture and directly collected in the Collection Tube of PAXgene Blood RNA Kit IVD. Extraction of total RNA was performed by Qiagen PAXgene Blood RNA Kit IVD according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Sisir,K.,Dutta
| Sample_contact_email | sdutta@howard.edu
| Sample_contact_phone | 202-806-6942
| Sample_contact_fax | 202-806-5832
| Sample_contact_laboratory | Molecular Genetics
| Sample_contact_department | Biology
| Sample_contact_institute | Howard University
| Sample_contact_address | 415 College Street, NW
| Sample_contact_city | Washington DC
| Sample_contact_state | DC
| Sample_contact_zip/postal_code | 20059
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565094/suppl/GSM565094.CEL.gz
| Sample_series_id | GSE22868
| Sample_data_row_count | 54675
| |
|
GSM565095 | GPL570 |
|
High PCB Exposure, Sample 2
|
45-month-old Slovak child, high PCB exposure
|
ethnicity: Slovak
gender: male
age: 45 months
tissue: blood
exposure: high PCB exposure
|
Gene expression data from a child with high exposure to PCBs.
|
Sample_geo_accession | GSM565095
| Sample_status | Public on Sep 01 2011
| Sample_submission_date | Jul 09 2010
| Sample_last_update_date | Sep 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Child with high PCBs exposure.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Child's blood (2.5cc) was drawn by venipuncture and directly collected in the Collection Tube of PAXgene Blood RNA Kit IVD. Extraction of total RNA was performed by Qiagen PAXgene Blood RNA Kit IVD according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Sisir,K.,Dutta
| Sample_contact_email | sdutta@howard.edu
| Sample_contact_phone | 202-806-6942
| Sample_contact_fax | 202-806-5832
| Sample_contact_laboratory | Molecular Genetics
| Sample_contact_department | Biology
| Sample_contact_institute | Howard University
| Sample_contact_address | 415 College Street, NW
| Sample_contact_city | Washington DC
| Sample_contact_state | DC
| Sample_contact_zip/postal_code | 20059
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565095/suppl/GSM565095.CEL.gz
| Sample_series_id | GSE22868
| Sample_data_row_count | 54675
| |
|
GSM565096 | GPL570 |
|
High PCB Exposure, Sample 3
|
45-month-old Slovak child, high PCB exposure
|
ethnicity: Slovak
gender: female
age: 45 months
tissue: blood
exposure: high PCB exposure
|
Gene expression data from a child with high exposure to PCBs.
|
Sample_geo_accession | GSM565096
| Sample_status | Public on Sep 01 2011
| Sample_submission_date | Jul 09 2010
| Sample_last_update_date | Sep 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Child with high PCBs exposure.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Child's blood (2.5cc) was drawn by venipuncture and directly collected in the Collection Tube of PAXgene Blood RNA Kit IVD. Extraction of total RNA was performed by Qiagen PAXgene Blood RNA Kit IVD according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Sisir,K.,Dutta
| Sample_contact_email | sdutta@howard.edu
| Sample_contact_phone | 202-806-6942
| Sample_contact_fax | 202-806-5832
| Sample_contact_laboratory | Molecular Genetics
| Sample_contact_department | Biology
| Sample_contact_institute | Howard University
| Sample_contact_address | 415 College Street, NW
| Sample_contact_city | Washington DC
| Sample_contact_state | DC
| Sample_contact_zip/postal_code | 20059
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565096/suppl/GSM565096.CEL.gz
| Sample_series_id | GSE22868
| Sample_data_row_count | 54675
| |
|
GSM565097 | GPL570 |
|
High PCB Exposure, Sample 4
|
45-month-old Slovak child, high PCB exposure
|
ethnicity: Slovak
gender: male
age: 45 months
tissue: blood
exposure: high PCB exposure
|
Gene expression data from a child with high exposure to PCBs.
|
Sample_geo_accession | GSM565097
| Sample_status | Public on Sep 01 2011
| Sample_submission_date | Jul 09 2010
| Sample_last_update_date | Sep 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Child with high PCBs exposure.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Child's blood (2.5cc) was drawn by venipuncture and directly collected in the Collection Tube of PAXgene Blood RNA Kit IVD. Extraction of total RNA was performed by Qiagen PAXgene Blood RNA Kit IVD according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Sisir,K.,Dutta
| Sample_contact_email | sdutta@howard.edu
| Sample_contact_phone | 202-806-6942
| Sample_contact_fax | 202-806-5832
| Sample_contact_laboratory | Molecular Genetics
| Sample_contact_department | Biology
| Sample_contact_institute | Howard University
| Sample_contact_address | 415 College Street, NW
| Sample_contact_city | Washington DC
| Sample_contact_state | DC
| Sample_contact_zip/postal_code | 20059
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565097/suppl/GSM565097.CEL.gz
| Sample_series_id | GSE22868
| Sample_data_row_count | 54675
| |
|
GSM565098 | GPL570 |
|
High PCB Exposure, Sample 5
|
45-month-old Slovak child, high PCB exposure
|
ethnicity: Slovak
gender: female
age: 45 months
tissue: blood
exposure: high PCB exposure
|
Gene expression data from a child with high exposure to PCBs.
|
Sample_geo_accession | GSM565098
| Sample_status | Public on Sep 01 2011
| Sample_submission_date | Jul 09 2010
| Sample_last_update_date | Sep 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Child with high PCBs exposure.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Child's blood (2.5cc) was drawn by venipuncture and directly collected in the Collection Tube of PAXgene Blood RNA Kit IVD. Extraction of total RNA was performed by Qiagen PAXgene Blood RNA Kit IVD according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Sisir,K.,Dutta
| Sample_contact_email | sdutta@howard.edu
| Sample_contact_phone | 202-806-6942
| Sample_contact_fax | 202-806-5832
| Sample_contact_laboratory | Molecular Genetics
| Sample_contact_department | Biology
| Sample_contact_institute | Howard University
| Sample_contact_address | 415 College Street, NW
| Sample_contact_city | Washington DC
| Sample_contact_state | DC
| Sample_contact_zip/postal_code | 20059
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565098/suppl/GSM565098.CEL.gz
| Sample_series_id | GSE22868
| Sample_data_row_count | 54675
| |
|
GSM565099 | GPL570 |
|
High PCB Exposure, Sample 6
|
45-month-old Slovak child, high PCB exposure
|
ethnicity: Slovak
gender: female
age: 45 months
tissue: blood
exposure: high PCB exposure
|
Gene expression data from a child with high exposure to PCBs.
|
Sample_geo_accession | GSM565099
| Sample_status | Public on Sep 01 2011
| Sample_submission_date | Jul 09 2010
| Sample_last_update_date | Sep 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Child with high PCBs exposure.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Child's blood (2.5cc) was drawn by venipuncture and directly collected in the Collection Tube of PAXgene Blood RNA Kit IVD. Extraction of total RNA was performed by Qiagen PAXgene Blood RNA Kit IVD according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Sisir,K.,Dutta
| Sample_contact_email | sdutta@howard.edu
| Sample_contact_phone | 202-806-6942
| Sample_contact_fax | 202-806-5832
| Sample_contact_laboratory | Molecular Genetics
| Sample_contact_department | Biology
| Sample_contact_institute | Howard University
| Sample_contact_address | 415 College Street, NW
| Sample_contact_city | Washington DC
| Sample_contact_state | DC
| Sample_contact_zip/postal_code | 20059
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565099/suppl/GSM565099.CEL.gz
| Sample_series_id | GSE22868
| Sample_data_row_count | 54675
| |
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GSM565100 | GPL570 |
|
High PCB Exposure, Sample 7
|
45-month-old Slovak child, high PCB exposure
|
ethnicity: Slovak
gender: male
age: 45 months
tissue: blood
exposure: high PCB exposure
|
Gene expression data from a child with high exposure to PCBs.
|
Sample_geo_accession | GSM565100
| Sample_status | Public on Sep 01 2011
| Sample_submission_date | Jul 09 2010
| Sample_last_update_date | Sep 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Child with high PCBs exposure.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Child's blood (2.5cc) was drawn by venipuncture and directly collected in the Collection Tube of PAXgene Blood RNA Kit IVD. Extraction of total RNA was performed by Qiagen PAXgene Blood RNA Kit IVD according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Sisir,K.,Dutta
| Sample_contact_email | sdutta@howard.edu
| Sample_contact_phone | 202-806-6942
| Sample_contact_fax | 202-806-5832
| Sample_contact_laboratory | Molecular Genetics
| Sample_contact_department | Biology
| Sample_contact_institute | Howard University
| Sample_contact_address | 415 College Street, NW
| Sample_contact_city | Washington DC
| Sample_contact_state | DC
| Sample_contact_zip/postal_code | 20059
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565100/suppl/GSM565100.CEL.gz
| Sample_series_id | GSE22868
| Sample_data_row_count | 54675
| |
|
GSM565101 | GPL570 |
|
High PCB Exposure, Sample 8
|
45-month-old Slovak child, high PCB exposure
|
ethnicity: Slovak
gender: male
age: 45 months
tissue: blood
exposure: high PCB exposure
|
Gene expression data from a child with high exposure to PCBs.
|
Sample_geo_accession | GSM565101
| Sample_status | Public on Sep 01 2011
| Sample_submission_date | Jul 09 2010
| Sample_last_update_date | Sep 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Child with high PCBs exposure.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Child's blood (2.5cc) was drawn by venipuncture and directly collected in the Collection Tube of PAXgene Blood RNA Kit IVD. Extraction of total RNA was performed by Qiagen PAXgene Blood RNA Kit IVD according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Sisir,K.,Dutta
| Sample_contact_email | sdutta@howard.edu
| Sample_contact_phone | 202-806-6942
| Sample_contact_fax | 202-806-5832
| Sample_contact_laboratory | Molecular Genetics
| Sample_contact_department | Biology
| Sample_contact_institute | Howard University
| Sample_contact_address | 415 College Street, NW
| Sample_contact_city | Washington DC
| Sample_contact_state | DC
| Sample_contact_zip/postal_code | 20059
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565101/suppl/GSM565101.CEL.gz
| Sample_series_id | GSE22868
| Sample_data_row_count | 54675
| |
|
GSM565102 | GPL570 |
|
High PCB Exposure, Sample 9
|
45-month-old Slovak child, high PCB exposure
|
ethnicity: Slovak
gender: female
age: 45 months
tissue: blood
exposure: high PCB exposure
|
Gene expression data from a child with high exposure to PCBs.
|
Sample_geo_accession | GSM565102
| Sample_status | Public on Sep 01 2011
| Sample_submission_date | Jul 09 2010
| Sample_last_update_date | Sep 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Child with high PCBs exposure.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Child's blood (2.5cc) was drawn by venipuncture and directly collected in the Collection Tube of PAXgene Blood RNA Kit IVD. Extraction of total RNA was performed by Qiagen PAXgene Blood RNA Kit IVD according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL570
| Sample_contact_name | Sisir,K.,Dutta
| Sample_contact_email | sdutta@howard.edu
| Sample_contact_phone | 202-806-6942
| Sample_contact_fax | 202-806-5832
| Sample_contact_laboratory | Molecular Genetics
| Sample_contact_department | Biology
| Sample_contact_institute | Howard University
| Sample_contact_address | 415 College Street, NW
| Sample_contact_city | Washington DC
| Sample_contact_state | DC
| Sample_contact_zip/postal_code | 20059
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565102/suppl/GSM565102.CEL.gz
| Sample_series_id | GSE22868
| Sample_data_row_count | 54675
| |
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