Search results for the GEO ID: GSE22922 |
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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM565980 | GPL1261 |
|
Splenocyte 2month WT Biologic Replicate 1
|
Splenocyte 2month WT Biologic Replicate 1
|
sex: Male
age: 2 months
strain: C57/BL6
cell source: Spleen
cell type: splenocyte
genotype: wild type
|
Hybridization was performed by the Johns Hopkins Medical Institutions Microarray Core Facility.
|
Sample_geo_accession | GSM565980
| Sample_status | Public on Jan 30 2013
| Sample_submission_date | Jul 13 2010
| Sample_last_update_date | Jan 30 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | National Cancer Institute
| Sample_treatment_protocol_ch1 | N/A
| Sample_growth_protocol_ch1 | Mice were maintained in the Johns Hopkins Broadway Research Building Animal Facility.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Kit (QIAGEN)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | One round amplification protocol for total RNA following Affymetrix’ specifications using T7 promoter oligo dT primer for cDNA synthesis, and ENZO IVT kit (www.affymetrix.com, GeneChip Expression Analysis, Technical Manual, 2003).
| Sample_hyb_protocol | 16hrs at 45° C with rotation (60rpm) as described by Affymetrix in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_scan_protocol | Using Affymetrix’ GeneChip Scanner 3000 7G and default parameters described by the manufacturer in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_data_processing | Image analysis using GCOS 1.4, using MAS 5.0 algorithm and manufacturer’s specifications. Global scaling of images to a target intensity of 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | Linda,,Resar
| Sample_contact_email | lresar@jhmi.edu
| Sample_contact_laboratory | Pediatric Oncology
| Sample_contact_department | Hematology
| Sample_contact_institute | Johns Hopkins University
| Sample_contact_address | 720 Rutland Ave
| Sample_contact_city | Baltimore
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 21205
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565980/suppl/GSM565980_FDiC_HMGM_WTM2mo_1a_MOE430_2.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565980/suppl/GSM565980_FDiC_HMGM_WTM2mo_1a_MOE430_2.CHP.gz
| Sample_series_id | GSE22922
| Sample_data_row_count | 45101
| |
|
GSM565981 | GPL1261 |
|
Splenocyte 2month TG Biologic Replicate 1
|
Splenocytes 2 months transgenic biologic replicate 1
|
sex: Male
age: 2 months
strain: C57/BL6
cell source: Spleen
cell type: splenocyte
genotype: HMGA1a transgenic
|
Hybridization was performed by the Johns Hopkins Medical Institutions Microarray Core Facility.
|
Sample_geo_accession | GSM565981
| Sample_status | Public on Jan 30 2013
| Sample_submission_date | Jul 13 2010
| Sample_last_update_date | Jan 30 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | National Cancer Institute
| Sample_treatment_protocol_ch1 | N/A
| Sample_growth_protocol_ch1 | Mice were maintained in the Johns Hopkins Broadway Research Building Animal Facility.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Kit (QIAGEN)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | One round amplification protocol for total RNA following Affymetrix’ specifications using T7 promoter oligo dT primer for cDNA synthesis, and ENZO IVT kit (www.affymetrix.com, GeneChip Expression Analysis, Technical Manual, 2003).
| Sample_hyb_protocol | 16hrs at 45° C with rotation (60rpm) as described by Affymetrix in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_scan_protocol | Using Affymetrix’ GeneChip Scanner 3000 7G and default parameters described by the manufacturer in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_data_processing | Image analysis using GCOS 1.4, using MAS 5.0 algorithm and manufacturer’s specifications. Global scaling of images to a target intensity of 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | Linda,,Resar
| Sample_contact_email | lresar@jhmi.edu
| Sample_contact_laboratory | Pediatric Oncology
| Sample_contact_department | Hematology
| Sample_contact_institute | Johns Hopkins University
| Sample_contact_address | 720 Rutland Ave
| Sample_contact_city | Baltimore
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 21205
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565981/suppl/GSM565981_FDiC_HMGM_TgM2mo_1a_MOE430_2.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM565nnn/GSM565981/suppl/GSM565981_FDiC_HMGM_TgM2mo_1a_MOE430_2.CHP.gz
| Sample_series_id | GSE22922
| Sample_data_row_count | 45101
| |
|
GSM566100 | GPL1261 |
|
Splenocyte 12month WT Biologic Replicate 1
|
Splenocyte 12month WT Biologic Replicate 1
|
sex: Male
age: 12 months
strain: C57/BL6
cell source: Spleen
cell type: splenocyte
genotype: wild type
|
Hybridization was performed by the Johns Hopkins Medical Institutions Microarray Core Facility.
|
Sample_geo_accession | GSM566100
| Sample_status | Public on Jan 30 2013
| Sample_submission_date | Jul 13 2010
| Sample_last_update_date | Jan 30 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | National Cancer Institute
| Sample_treatment_protocol_ch1 | N/A
| Sample_growth_protocol_ch1 | Mice were maintained in the Johns Hopkins Broadway Research Building Animal Facility.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Kit (QIAGEN)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | One round amplification protocol for total RNA following Affymetrix’ specifications using T7 promoter oligo dT primer for cDNA synthesis, and ENZO IVT kit (www.affymetrix.com, GeneChip Expression Analysis, Technical Manual, 2003).
| Sample_hyb_protocol | 16hrs at 45° C with rotation (60rpm) as described by Affymetrix in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_scan_protocol | Using Affymetrix’ GeneChip Scanner 3000 7G and default parameters described by the manufacturer in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_data_processing | Image analysis using GCOS 1.4, using MAS 5.0 algorithm and manufacturer’s specifications. Global scaling of images to a target intensity of 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | Linda,,Resar
| Sample_contact_email | lresar@jhmi.edu
| Sample_contact_laboratory | Pediatric Oncology
| Sample_contact_department | Hematology
| Sample_contact_institute | Johns Hopkins University
| Sample_contact_address | 720 Rutland Ave
| Sample_contact_city | Baltimore
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 21205
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM566nnn/GSM566100/suppl/GSM566100_FDiC_HMGM_WTM12mo_1a_MOE430_2.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM566nnn/GSM566100/suppl/GSM566100_FDiC_HMGM_WTM12mo_1a_MOE430_2.CHP.gz
| Sample_series_id | GSE22922
| Sample_data_row_count | 45101
| |
|
GSM566101 | GPL1261 |
|
Splenocyte 12month TG Biologic Replicate 1
|
Splenocyte 12month TG Biologic Replicate 1
|
sex: Male
age: 12 months
strain: C57/BL6
cell source: Spleen
cell type: splenocyte
genotype: HMGA1a transgenic
|
Hybridization was performed by the Johns Hopkins Medical Institutions Microarray Core Facility.
|
Sample_geo_accession | GSM566101
| Sample_status | Public on Jan 30 2013
| Sample_submission_date | Jul 13 2010
| Sample_last_update_date | Jan 30 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | National Cancer Institute
| Sample_treatment_protocol_ch1 | N/A
| Sample_growth_protocol_ch1 | Mice were maintained in the Johns Hopkins Broadway Research Building Animal Facility.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Kit (QIAGEN)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | One round amplification protocol for total RNA following Affymetrix’ specifications using T7 promoter oligo dT primer for cDNA synthesis, and ENZO IVT kit (www.affymetrix.com, GeneChip Expression Analysis, Technical Manual, 2003).
| Sample_hyb_protocol | 16hrs at 45° C with rotation (60rpm) as described by Affymetrix in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_scan_protocol | Using Affymetrix’ GeneChip Scanner 3000 7G and default parameters described by the manufacturer in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_data_processing | Image analysis using GCOS 1.4, using MAS 5.0 algorithm and manufacturer’s specifications. Global scaling of images to a target intensity of 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | Linda,,Resar
| Sample_contact_email | lresar@jhmi.edu
| Sample_contact_laboratory | Pediatric Oncology
| Sample_contact_department | Hematology
| Sample_contact_institute | Johns Hopkins University
| Sample_contact_address | 720 Rutland Ave
| Sample_contact_city | Baltimore
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 21205
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM566nnn/GSM566101/suppl/GSM566101_FDiC_HMGM_TgM12mo_1a_MOE430_2.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM566nnn/GSM566101/suppl/GSM566101_FDiC_HMGM_TgM12mo_1a_MOE430_2.CHP.gz
| Sample_series_id | GSE22922
| Sample_data_row_count | 45101
| |
|
GSM566103 | GPL1261 |
|
Splenocyte 2month WT Biologic Replicate 2
|
Splenocyte 2month WT Biologic Replicate 2
|
sex: Male
age: 2 months
strain: C57/BL6
cell source: Spleen
cell type: splenocyte
genotype: wild type
|
Hybridization was performed by the Johns Hopkins Medical Institutions Microarray Core Facility.
|
Sample_geo_accession | GSM566103
| Sample_status | Public on Jan 30 2013
| Sample_submission_date | Jul 13 2010
| Sample_last_update_date | Jan 30 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | National Cancer Institute
| Sample_treatment_protocol_ch1 | N/A
| Sample_growth_protocol_ch1 | Mice were maintained in the Johns Hopkins Broadway Research Building Animal Facility.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Kit (QIAGEN)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | One round amplification protocol for total RNA following Affymetrix’ specifications using T7 promoter oligo dT primer for cDNA synthesis, and ENZO IVT kit (www.affymetrix.com, GeneChip Expression Analysis, Technical Manual, 2003).
| Sample_hyb_protocol | 16hrs at 45° C with rotation (60rpm) as described by Affymetrix in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_scan_protocol | Using Affymetrix’ GeneChip Scanner 3000 7G and default parameters described by the manufacturer in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_data_processing | Image analysis using GCOS 1.4, using MAS 5.0 algorithm and manufacturer’s specifications. Global scaling of images to a target intensity of 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | Linda,,Resar
| Sample_contact_email | lresar@jhmi.edu
| Sample_contact_laboratory | Pediatric Oncology
| Sample_contact_department | Hematology
| Sample_contact_institute | Johns Hopkins University
| Sample_contact_address | 720 Rutland Ave
| Sample_contact_city | Baltimore
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 21205
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM566nnn/GSM566103/suppl/GSM566103_FDiC_HMGM_WTM2mo_2a_MOE430_2.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM566nnn/GSM566103/suppl/GSM566103_FDiC_HMGM_WTM2mo_2a_MOE430_2.CHP.gz
| Sample_series_id | GSE22922
| Sample_data_row_count | 45101
| |
|
GSM566105 | GPL1261 |
|
Splenocyte 2month TG Biologic Replicate 2
|
Splenocyte 2month TG Biologic Replicate 2
|
sex: Male
age: 2 months
strain: C57/BL6
cell source: Spleen
cell type: splenocyte
genotype: HMGA1a transgenic
|
Hybridization was performed by the Johns Hopkins Medical Institutions Microarray Core Facility.
|
Sample_geo_accession | GSM566105
| Sample_status | Public on Jan 30 2013
| Sample_submission_date | Jul 13 2010
| Sample_last_update_date | Jan 30 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | National Cancer Institute
| Sample_treatment_protocol_ch1 | N/A
| Sample_growth_protocol_ch1 | Mice were maintained in the Johns Hopkins Broadway Research Building Animal Facility.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Kit (QIAGEN)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | One round amplification protocol for total RNA following Affymetrix’ specifications using T7 promoter oligo dT primer for cDNA synthesis, and ENZO IVT kit (www.affymetrix.com, GeneChip Expression Analysis, Technical Manual, 2003).
| Sample_hyb_protocol | 16hrs at 45° C with rotation (60rpm) as described by Affymetrix in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_scan_protocol | Using Affymetrix’ GeneChip Scanner 3000 7G and default parameters described by the manufacturer in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_data_processing | Image analysis using GCOS 1.4, using MAS 5.0 algorithm and manufacturer’s specifications. Global scaling of images to a target intensity of 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | Linda,,Resar
| Sample_contact_email | lresar@jhmi.edu
| Sample_contact_laboratory | Pediatric Oncology
| Sample_contact_department | Hematology
| Sample_contact_institute | Johns Hopkins University
| Sample_contact_address | 720 Rutland Ave
| Sample_contact_city | Baltimore
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 21205
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM566nnn/GSM566105/suppl/GSM566105_FDiC_HMGM_TgM2mo_2a_MOE430_2.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM566nnn/GSM566105/suppl/GSM566105_FDiC_HMGM_TgM2mo_2a_MOE430_2.CHP.gz
| Sample_series_id | GSE22922
| Sample_data_row_count | 45101
| |
|
GSM566106 | GPL1261 |
|
Splenocyte 12month WT Biologic Replicate 2
|
Splenocyte 12month WT Biologic Replicate 2
|
sex: Male
age: 12 months
strain: C57/BL6
cell source: Spleen
cell type: splenocyte
genotype: wild type
|
Hybridization was performed by the Johns Hopkins Medical Institutions Microarray Core Facility.
|
Sample_geo_accession | GSM566106
| Sample_status | Public on Jan 30 2013
| Sample_submission_date | Jul 13 2010
| Sample_last_update_date | Jan 30 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | National Cancer Institute
| Sample_treatment_protocol_ch1 | N/A
| Sample_growth_protocol_ch1 | Mice were maintained in the Johns Hopkins Broadway Research Building Animal Facility.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Kit (QIAGEN)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | One round amplification protocol for total RNA following Affymetrix’ specifications using T7 promoter oligo dT primer for cDNA synthesis, and ENZO IVT kit (www.affymetrix.com, GeneChip Expression Analysis, Technical Manual, 2003).
| Sample_hyb_protocol | 16hrs at 45° C with rotation (60rpm) as described by Affymetrix in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_scan_protocol | Using Affymetrix’ GeneChip Scanner 3000 7G and default parameters described by the manufacturer in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_data_processing | Image analysis using GCOS 1.4, using MAS 5.0 algorithm and manufacturer’s specifications. Global scaling of images to a target intensity of 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | Linda,,Resar
| Sample_contact_email | lresar@jhmi.edu
| Sample_contact_laboratory | Pediatric Oncology
| Sample_contact_department | Hematology
| Sample_contact_institute | Johns Hopkins University
| Sample_contact_address | 720 Rutland Ave
| Sample_contact_city | Baltimore
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 21205
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM566nnn/GSM566106/suppl/GSM566106_FDiC_HMGM_WTM12mo_2a_MOE430_2.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM566nnn/GSM566106/suppl/GSM566106_FDiC_HMGM_WTM12mo_2a_MOE430_2.CHP.gz
| Sample_series_id | GSE22922
| Sample_data_row_count | 45101
| |
|
GSM566108 | GPL1261 |
|
Splenocyte 12month TG Biologic Replicate 2
|
Splenocyte 12month TG Biologic Replicate 2
|
sex: Male
age: 12 months
strain: C57/BL6
cell source: Spleen
cell type: splenocyte
genotype: HMGA1a transgenic
|
Hybridization was performed by the Johns Hopkins Medical Institutions Microarray Core Facility.
|
Sample_geo_accession | GSM566108
| Sample_status | Public on Jan 30 2013
| Sample_submission_date | Jul 13 2010
| Sample_last_update_date | Jan 30 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | National Cancer Institute
| Sample_treatment_protocol_ch1 | N/A
| Sample_growth_protocol_ch1 | Mice were maintained in the Johns Hopkins Broadway Research Building Animal Facility.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Kit (QIAGEN)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | One round amplification protocol for total RNA following Affymetrix’ specifications using T7 promoter oligo dT primer for cDNA synthesis, and ENZO IVT kit (www.affymetrix.com, GeneChip Expression Analysis, Technical Manual, 2003).
| Sample_hyb_protocol | 16hrs at 45° C with rotation (60rpm) as described by Affymetrix in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_scan_protocol | Using Affymetrix’ GeneChip Scanner 3000 7G and default parameters described by the manufacturer in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_data_processing | Image analysis using GCOS 1.4, using MAS 5.0 algorithm and manufacturer’s specifications. Global scaling of images to a target intensity of 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | Linda,,Resar
| Sample_contact_email | lresar@jhmi.edu
| Sample_contact_laboratory | Pediatric Oncology
| Sample_contact_department | Hematology
| Sample_contact_institute | Johns Hopkins University
| Sample_contact_address | 720 Rutland Ave
| Sample_contact_city | Baltimore
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 21205
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM566nnn/GSM566108/suppl/GSM566108_FDiC_HMGM_TgM12mo_2a_MOE430_2.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM566nnn/GSM566108/suppl/GSM566108_FDiC_HMGM_TgM12mo_2a_MOE430_2.CHP.gz
| Sample_series_id | GSE22922
| Sample_data_row_count | 45101
| |
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