Search results for the GEO ID: GSE22985  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM567345 | GPL1261 |
|
2D11-1
|
T cell clone
|
cell type: CD8aa Tregs
|
Gene Expression Data
|
| Sample_geo_accession | GSM567345
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Jul 17 2010
| | Sample_last_update_date | Sep 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | cell lines were grown in the presence of their respective antigen and antigen-presenting cells in the complete media supplemented with IL-2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Mini kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Ovation RNA Amplification System V2 (Nugen)
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | GeneSpring GX was used for RMA normalization with pm probes and validated with R against bgversion=2. This PM based method involves three steps:
| | Sample_data_processing | 1. Background Correction: This step is based on the distribution of PM values amongst probes on an Affymetrix array.
| | Sample_data_processing | 2. Normalization: It uses Quantile normalization.
| | Sample_data_processing | 3. Probe summarization: It involves summarising the log(PM) after background correction of probes which is followed by estimation of expression values using robust procedure called Median Polish.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Radu,,Cojocaru
| | Sample_contact_email | raducojo@gmail.com
| | Sample_contact_institute | Elsevier
| | Sample_contact_address | 9430 Key West Ave
| | Sample_contact_city | Rockville
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20850
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM567nnn/GSM567345/suppl/GSM567345.CEL.gz
| | Sample_series_id | GSE22985
| | Sample_data_row_count | 45101
| | |
|
GSM567346 | GPL1261 |
|
2D11-2
|
T cell clone
|
cell type: CD8aa Tregs
|
Gene Expression Data
|
| Sample_geo_accession | GSM567346
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Jul 17 2010
| | Sample_last_update_date | Sep 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | cell lines were grown in the presence of their respective antigen and antigen-presenting cells in the complete media supplemented with IL-2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Mini kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Ovation RNA Amplification System V2 (Nugen)
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | GeneSpring GX was used for RMA normalization with pm probes and validated with R against bgversion=2. This PM based method involves three steps:
| | Sample_data_processing | 1. Background Correction: This step is based on the distribution of PM values amongst probes on an Affymetrix array.
| | Sample_data_processing | 2. Normalization: It uses Quantile normalization.
| | Sample_data_processing | 3. Probe summarization: It involves summarising the log(PM) after background correction of probes which is followed by estimation of expression values using robust procedure called Median Polish.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Radu,,Cojocaru
| | Sample_contact_email | raducojo@gmail.com
| | Sample_contact_institute | Elsevier
| | Sample_contact_address | 9430 Key West Ave
| | Sample_contact_city | Rockville
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20850
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM567nnn/GSM567346/suppl/GSM567346.CEL.gz
| | Sample_series_id | GSE22985
| | Sample_data_row_count | 45101
| | |
|
GSM567347 | GPL1261 |
|
2D11-4
|
T cell clone
|
cell type: CD8aa Tregs
|
Gene Expression Data
|
| Sample_geo_accession | GSM567347
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Jul 17 2010
| | Sample_last_update_date | Sep 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | cell lines were grown in the presence of their respective antigen and antigen-presenting cells in the complete media supplemented with IL-2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Mini kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Ovation RNA Amplification System V2 (Nugen)
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | GeneSpring GX was used for RMA normalization with pm probes and validated with R against bgversion=2. This PM based method involves three steps:
| | Sample_data_processing | 1. Background Correction: This step is based on the distribution of PM values amongst probes on an Affymetrix array.
| | Sample_data_processing | 2. Normalization: It uses Quantile normalization.
| | Sample_data_processing | 3. Probe summarization: It involves summarising the log(PM) after background correction of probes which is followed by estimation of expression values using robust procedure called Median Polish.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Radu,,Cojocaru
| | Sample_contact_email | raducojo@gmail.com
| | Sample_contact_institute | Elsevier
| | Sample_contact_address | 9430 Key West Ave
| | Sample_contact_city | Rockville
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20850
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM567nnn/GSM567347/suppl/GSM567347.CEL.gz
| | Sample_series_id | GSE22985
| | Sample_data_row_count | 45101
| | |
|
GSM567348 | GPL1261 |
|
OvacD8-1
|
T cell clone
|
cell type: OT-1 CD8aa+TCRab+ T cells
|
Gene Expression Data
|
| Sample_geo_accession | GSM567348
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Jul 17 2010
| | Sample_last_update_date | Sep 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | cell lines were grown in the presence of their respective antigen and antigen-presenting cells in the complete media supplemented with IL-2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Mini kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Ovation RNA Amplification System V2 (Nugen)
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | GeneSpring GX was used for RMA normalization with pm probes and validated with R against bgversion=2. This PM based method involves three steps:
| | Sample_data_processing | 1. Background Correction: This step is based on the distribution of PM values amongst probes on an Affymetrix array.
| | Sample_data_processing | 2. Normalization: It uses Quantile normalization.
| | Sample_data_processing | 3. Probe summarization: It involves summarising the log(PM) after background correction of probes which is followed by estimation of expression values using robust procedure called Median Polish.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Radu,,Cojocaru
| | Sample_contact_email | raducojo@gmail.com
| | Sample_contact_institute | Elsevier
| | Sample_contact_address | 9430 Key West Ave
| | Sample_contact_city | Rockville
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20850
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM567nnn/GSM567348/suppl/GSM567348.CEL.gz
| | Sample_series_id | GSE22985
| | Sample_data_row_count | 45101
| | |
|
GSM567349 | GPL1261 |
|
OvacD8-2
|
T cell clone
|
cell type: OT-1 CD8aa+TCRab+ T cells
|
Gene Expression Data
|
| Sample_geo_accession | GSM567349
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Jul 17 2010
| | Sample_last_update_date | Sep 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | cell lines were grown in the presence of their respective antigen and antigen-presenting cells in the complete media supplemented with IL-2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Mini kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Ovation RNA Amplification System V2 (Nugen)
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | GeneSpring GX was used for RMA normalization with pm probes and validated with R against bgversion=2. This PM based method involves three steps:
| | Sample_data_processing | 1. Background Correction: This step is based on the distribution of PM values amongst probes on an Affymetrix array.
| | Sample_data_processing | 2. Normalization: It uses Quantile normalization.
| | Sample_data_processing | 3. Probe summarization: It involves summarising the log(PM) after background correction of probes which is followed by estimation of expression values using robust procedure called Median Polish.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Radu,,Cojocaru
| | Sample_contact_email | raducojo@gmail.com
| | Sample_contact_institute | Elsevier
| | Sample_contact_address | 9430 Key West Ave
| | Sample_contact_city | Rockville
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20850
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM567nnn/GSM567349/suppl/GSM567349.CEL.gz
| | Sample_series_id | GSE22985
| | Sample_data_row_count | 45101
| | |
|
GSM567350 | GPL1261 |
|
OvacD8-3
|
T cell clone
|
cell type: OT-1 CD8aa+TCRab+ T cells
|
Gene Expression Data
|
| Sample_geo_accession | GSM567350
| | Sample_status | Public on Sep 01 2011
| | Sample_submission_date | Jul 17 2010
| | Sample_last_update_date | Sep 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | cell lines were grown in the presence of their respective antigen and antigen-presenting cells in the complete media supplemented with IL-2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Mini kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Ovation RNA Amplification System V2 (Nugen)
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | GeneSpring GX was used for RMA normalization with pm probes and validated with R against bgversion=2. This PM based method involves three steps:
| | Sample_data_processing | 1. Background Correction: This step is based on the distribution of PM values amongst probes on an Affymetrix array.
| | Sample_data_processing | 2. Normalization: It uses Quantile normalization.
| | Sample_data_processing | 3. Probe summarization: It involves summarising the log(PM) after background correction of probes which is followed by estimation of expression values using robust procedure called Median Polish.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Radu,,Cojocaru
| | Sample_contact_email | raducojo@gmail.com
| | Sample_contact_institute | Elsevier
| | Sample_contact_address | 9430 Key West Ave
| | Sample_contact_city | Rockville
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20850
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM567nnn/GSM567350/suppl/GSM567350.CEL.gz
| | Sample_series_id | GSE22985
| | Sample_data_row_count | 45101
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