Search results for the GEO ID: GSE23061  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM568847 | GPL3921 |
|
PGC-1alpha2x9_rep1
|
hMEC, 2x9
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568847
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568847/suppl/GSM568847.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568848 | GPL3921 |
|
PGC-1alpha2x9_rep2
|
hMEC, 2x9
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568848
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568848/suppl/GSM568848.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568849 | GPL3921 |
|
PGC-1alpha2x9_rep3
|
hMEC, 2x9
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568849
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568849/suppl/GSM568849.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568850 | GPL3921 |
|
PGC-1alpha2x9_rep4
|
hMEC, 2x9
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568850
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568850/suppl/GSM568850.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568851 | GPL3921 |
|
PGC-1alpha2x9_rep5
|
hMEC, 2x9
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568851
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568851/suppl/GSM568851.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568852 | GPL3921 |
|
PGC-1alpha2x9_rep6
|
hMEC, 2x9
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568852
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568852/suppl/GSM568852.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568853 | GPL3921 |
|
PGC-1alpha2x9_rep7
|
hMEC, 2x9
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568853
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568853/suppl/GSM568853.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568854 | GPL3921 |
|
PGC-1alpha2x9_rep8
|
hMEC, 2x9
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568854
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568854/suppl/GSM568854.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568855 | GPL3921 |
|
PGC-1alpha2x9_rep9
|
hMEC, 2x9
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568855
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568855/suppl/GSM568855.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568856 | GPL3921 |
|
PGC-1alpha2x9_rep10
|
hMEC, 2x10
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568856
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568856/suppl/GSM568856.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568857 | GPL3921 |
|
PGC-1alpha L2L3M_rep1
|
hMEC, L2L3
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568857
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568857/suppl/GSM568857.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568858 | GPL3921 |
|
PGC-1alpha L2L3M_rep2
|
hMEC, L2L3
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568858
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568858/suppl/GSM568858.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568859 | GPL3921 |
|
PGC-1alpha L2L3M_rep3
|
hMEC, L2L3
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568859
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568859/suppl/GSM568859.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568860 | GPL3921 |
|
PGC-1alpha L2L3M_rep4
|
hMEC, L2L3
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568860
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568860/suppl/GSM568860.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568861 | GPL3921 |
|
PGC-1alpha L2L3M_rep5
|
hMEC, L2L3
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568861
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568861/suppl/GSM568861.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568862 | GPL3921 |
|
PGC-1alpha L2L3M_rep6
|
hMEC, L2L3
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568862
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568862/suppl/GSM568862.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568863 | GPL3921 |
|
PGC-1alpha L2L3M_rep7
|
hMEC, L2L3
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568863
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568863/suppl/GSM568863.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568864 | GPL3921 |
|
PGC-1alpha L2L3M_rep8
|
hMEC, L2L3
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568864
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568864/suppl/GSM568864.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568865 | GPL3921 |
|
PGC-1alpha L2L3M_rep9
|
hMEC, L2L3
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568865
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568865/suppl/GSM568865.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
GSM568866 | GPL3921 |
|
PGC-1alpha L2L3M_rep10
|
hMEC, L2L3
|
cell type: mammary epitheliel
|
|
| Sample_geo_accession | GSM568866
| | Sample_status | Public on Nov 01 2010
| | Sample_submission_date | Jul 21 2010
| | Sample_last_update_date | Aug 23 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | hMECs were serum starved for 36h followed by infection with MOI=150 of adenoviruses expressing two variants of PGC1alpha, a protein ligand for ERRalpha: PGC-1alpha2x9 or PGC-1alpha L2L3M.
| | Sample_growth_protocol_ch1 | Primary human mammary epithelial cells were cultured in MEBM (Cambrex, East Rutherford, NJ) with MEGM bullet kit and supplemented with 5mg/ml transferrin and 10-5M isoproterenol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 1-cycle IVT
| | Sample_hyb_protocol | Manufacturer suggested
| | Sample_scan_protocol | GeneChip HT Scanner (Affymetrix P/N 00-0172)
| | Sample_data_processing | For the gene selection reported in the associated manuscript, the data were processed in dChip software; expresion data were log2-trasformed and normalized invariant set normalization with running median smoothing; expression was modelled by MBEI based on PM-MM differences. Single, array and probe outliers were considered.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Dmitri,A,Kazmin
| | Sample_contact_email | kazmi002@mc.duke.edu
| | Sample_contact_phone | 919-681-1348
| | Sample_contact_fax | 919-681-7139
| | Sample_contact_laboratory | McDonnell
| | Sample_contact_department | Pharmacology and Cancer Biology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | C264 LSRC, Research Dr
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM568nnn/GSM568866/suppl/GSM568866.CEL.gz
| | Sample_series_id | GSE23061
| | Sample_data_row_count | 22277
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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