Search results for the GEO ID: GSE23117  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM569471 | GPL570 |
|
SS gland, advanced, patient 10, batch 1
|
minor salivary gland
|
tissue: minor salivary gland
disease status: advanced SS
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569471
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569471/suppl/GSM569471.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
|
GSM569472 | GPL570 |
|
SS gland, advanced, patient 11, batch 1
|
minor salivary gland
|
tissue: minor salivary gland
disease status: advanced SS
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569472
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569472/suppl/GSM569472.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
|
GSM569473 | GPL570 |
|
non-SS control gland, patient 16, batch 2
|
minor salivary gland
|
tissue: minor salivary gland
disease status: non-SS control
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569473
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569473/suppl/GSM569473.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
|
GSM569474 | GPL570 |
|
non-SS control gland, patient 17, batch 2
|
minor salivary gland
|
tissue: minor salivary gland
disease status: non-SS control
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569474
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569474/suppl/GSM569474.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
|
GSM569475 | GPL570 |
|
non-SS control gland, patient 18, batch 2
|
minor salivary gland
|
tissue: minor salivary gland
disease status: non-SS control
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569475
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569475/suppl/GSM569475.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
|
GSM569476 | GPL570 |
|
non-SS control gland, patient 19, batch 2
|
minor salivary gland
|
tissue: minor salivary gland
disease status: non-SS control
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569476
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569476/suppl/GSM569476.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
|
GSM569477 | GPL570 |
|
SS gland, control gland, patient 1, batch 1
|
minor salivary gland
|
tissue: minor salivary gland
disease status: control gland from SS patient
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569477
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569477/suppl/GSM569477.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
|
GSM569478 | GPL570 |
|
SS gland, early, patient 20, batch 2
|
minor salivary gland
|
tissue: minor salivary gland
disease status: early SS
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569478
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569478/suppl/GSM569478.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
|
GSM569479 | GPL570 |
|
SS gland, early, patient 21, batch 2
|
minor salivary gland
|
tissue: minor salivary gland
disease status: early SS
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569479
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569479/suppl/GSM569479.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
|
GSM569480 | GPL570 |
|
SS gland, early, patient 4, batch 1
|
minor salivary gland
|
tissue: minor salivary gland
disease status: early SS
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569480
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569480/suppl/GSM569480.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
|
GSM569481 | GPL570 |
|
SS gland, early, patient 5, batch 1
|
minor salivary gland
|
tissue: minor salivary gland
disease status: early SS
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569481
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569481/suppl/GSM569481.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
|
GSM569482 | GPL570 |
|
SS gland, early, patient 6, batch 1
|
minor salivary gland
|
tissue: minor salivary gland
disease status: early SS
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569482
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569482/suppl/GSM569482.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
|
GSM569483 | GPL570 |
|
SS gland, moderate, patient 22, batch 2
|
minor salivary gland
|
tissue: minor salivary gland
disease status: moderate SS
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569483
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569483/suppl/GSM569483.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
|
GSM569484 | GPL570 |
|
SS gland, moderate, patient 7, batch 1
|
minor salivary gland
|
tissue: minor salivary gland
disease status: moderate SS
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569484
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569484/suppl/GSM569484.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
|
GSM569485 | GPL570 |
|
SS gland, moderate, patient 9, batch 1
|
minor salivary gland
|
tissue: minor salivary gland
disease status: moderate SS
|
RNA from minor salivary gland
|
| Sample_geo_accession | GSM569485
| | Sample_status | Public on May 01 2011
| | Sample_submission_date | Jul 23 2010
| | Sample_last_update_date | May 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Minor salivary glands were removed for routine diagnostic procedures
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction using Trizol Reagent and further purification using Qiagen Rneasy mini-kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 30ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0 using Affymetrix software EC (Experssion Console 1.1)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Niki,,Moutsopoulos
| | Sample_contact_email | nmoutsop@mail.nih.gov
| | Sample_contact_institute | NIDCR
| | Sample_contact_address | 30 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM569nnn/GSM569485/suppl/GSM569485.CEL.gz
| | Sample_series_id | GSE23117
| | Sample_data_row_count | 54675
| | |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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