Search results for the GEO ID: GSE23200  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM570852 | GPL1261 |
|
apSC_Rep1
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Aggregated Primary Sertoli cells
|
strain: C57BL/6 x 129
cell type: Primary Sertoli cell
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Gene expression data from aggregated primary Sertoli cell
|
| Sample_geo_accession | GSM570852
| | Sample_status | Public on Jun 23 2011
| | Sample_submission_date | Jul 27 2010
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | 10-20-day old mouse primary Sertoli cells and MSC-1 cell line were allowed to aggregate at 37 degrees Celsius for 48 hrs in media containing Ham's F10 media with supplements, and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Invitrogen Trizol RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with Gene Chip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125.
| | Sample_data_processing | Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM570nnn/GSM570852/suppl/GSM570852.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM570nnn/GSM570852/suppl/GSM570852.CHP.gz
| | Sample_series_id | GSE23200
| | Sample_data_row_count | 45101
| | |
|
GSM570853 | GPL1261 |
|
apSC_Rep2
|
Aggregated Primary Sertoli cells
|
strain: C57BL/6 x 129
cell type: Primary Sertoli cell
|
Gene expression data from aggregated primary Sertoli cell
|
| Sample_geo_accession | GSM570853
| | Sample_status | Public on Jun 23 2011
| | Sample_submission_date | Jul 27 2010
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | 10-20-day old mouse primary Sertoli cells and MSC-1 cell line were allowed to aggregate at 37 degrees Celsius for 48 hrs in media containing Ham's F10 media with supplements, and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Invitrogen Trizol RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with Gene Chip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125.
| | Sample_data_processing | Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM570nnn/GSM570853/suppl/GSM570853.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM570nnn/GSM570853/suppl/GSM570853.CHP.gz
| | Sample_series_id | GSE23200
| | Sample_data_row_count | 45101
| | |
|
GSM570854 | GPL1261 |
|
apSC_Rep3
|
Aggregated Primary Sertoli cells
|
strain: C57BL/6 x 129
cell type: Primary Sertoli cell
|
Gene expression data from aggregated primary Sertoli cell
|
| Sample_geo_accession | GSM570854
| | Sample_status | Public on Jun 23 2011
| | Sample_submission_date | Jul 27 2010
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | 10-20-day old mouse primary Sertoli cells and MSC-1 cell line were allowed to aggregate at 37 degrees Celsius for 48 hrs in media containing Ham's F10 media with supplements, and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Invitrogen Trizol RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with Gene Chip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125.
| | Sample_data_processing | Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM570nnn/GSM570854/suppl/GSM570854.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM570nnn/GSM570854/suppl/GSM570854.CHP.gz
| | Sample_series_id | GSE23200
| | Sample_data_row_count | 45101
| | |
|
GSM570855 | GPL1261 |
|
aMSC_1_Rep1
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Aggregated MSC-1 cells
|
cell line: Sertoli cell line (MSC-1)
|
Gene expression data from aggregated MSC-1 cells
|
| Sample_geo_accession | GSM570855
| | Sample_status | Public on Jun 23 2011
| | Sample_submission_date | Jul 27 2010
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | 10-20-day old mouse primary Sertoli cells and MSC-1 cell line were allowed to aggregate at 37 degrees Celsius for 48 hrs in media containing Ham's F10 media with supplements, and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Invitrogen Trizol RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with Gene Chip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125.
| | Sample_data_processing | Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM570nnn/GSM570855/suppl/GSM570855.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM570nnn/GSM570855/suppl/GSM570855.CHP.gz
| | Sample_series_id | GSE23200
| | Sample_data_row_count | 45101
| | |
|
GSM570856 | GPL1261 |
|
aMSC_1_Rep2
|
Aggregated MSC-1 cells
|
cell line: Sertoli cell line (MSC-1)
|
Gene expression data from aggregated MSC-1 cells
|
| Sample_geo_accession | GSM570856
| | Sample_status | Public on Jun 23 2011
| | Sample_submission_date | Jul 27 2010
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | 10-20-day old mouse primary Sertoli cells and MSC-1 cell line were allowed to aggregate at 37 degrees Celsius for 48 hrs in media containing Ham's F10 media with supplements, and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Invitrogen Trizol RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with Gene Chip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125.
| | Sample_data_processing | Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM570nnn/GSM570856/suppl/GSM570856.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM570nnn/GSM570856/suppl/GSM570856.CHP.gz
| | Sample_series_id | GSE23200
| | Sample_data_row_count | 45101
| | |
|
GSM570857 | GPL1261 |
|
aMSC_1_Rep3
|
Aggregated MSC-1 cells
|
cell line: Sertoli cell line (MSC-1)
|
Gene expression data from aggregated MSC-1 cells
|
| Sample_geo_accession | GSM570857
| | Sample_status | Public on Jun 23 2011
| | Sample_submission_date | Jul 27 2010
| | Sample_last_update_date | Jun 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | 10-20-day old mouse primary Sertoli cells and MSC-1 cell line were allowed to aggregate at 37 degrees Celsius for 48 hrs in media containing Ham's F10 media with supplements, and 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Invitrogen Trizol RNA extraction kit using the manufactorers protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RGU34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip® scanner 3000.
| | Sample_data_processing | The data were analyzed with Gene Chip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 125.
| | Sample_data_processing | Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,J.,Doyle
| | Sample_contact_email | doyleti@wsu.edu
| | Sample_contact_phone | 509 335 7079
| | Sample_contact_fax | 509 335 1907
| | Sample_contact_laboratory | Kwan Hee Kim
| | Sample_contact_department | School of Molecular Biosciences
| | Sample_contact_institute | Washington State University
| | Sample_contact_address | 100 Dairy Road
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99164
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM570nnn/GSM570857/suppl/GSM570857.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM570nnn/GSM570857/suppl/GSM570857.CHP.gz
| | Sample_series_id | GSE23200
| | Sample_data_row_count | 45101
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