Search results for the GEO ID: GSE23212 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM571000 | GPL1261 |
|
CD8+CX3CR1+ DC
|
spleens
|
strain: Cx3cr1gfp/+ C57BL/6
bmp4 treated: -
dendritic cell: CD8+CX3CR1+
|
|
Sample_geo_accession | GSM571000
| Sample_status | Public on Jul 28 2010
| Sample_submission_date | Jul 27 2010
| Sample_last_update_date | Apr 10 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | After collagenase D digestion, spleens from Cx3cr1gfp/+ C57BL/6 mice were enriched for CD11c+ cells by magnetic separation according to the manufacturer’s protocol (MiltenyiBiotec GmbH). Splenic CD11chi cells were isolated using the FACS ARIA high-speed sorter (Becton-Dickinson).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | QIAGEN miniRNA extraction kit was used.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | According to Affymetrix manual
| Sample_hyb_protocol | According to Affymetrix manual
| Sample_scan_protocol | According to Affymetrix manual
| Sample_data_processing | MAS5
| Sample_platform_id | GPL1261
| Sample_contact_name | Steffen,,Jung
| Sample_contact_email | s.jung@weizmann.ac.il
| Sample_contact_laboratory | Steffen Jung
| Sample_contact_department | Immunology
| Sample_contact_institute | The weizmann Institute of Science
| Sample_contact_address | Herzel
| Sample_contact_city | REHOVOT
| Sample_contact_zip/postal_code | 76100
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM571nnn/GSM571000/suppl/GSM571000.CEL.gz
| Sample_relation | Reanalyzed by: GSE45704
| Sample_series_id | GSE23212
| Sample_data_row_count | 45101
| |
|
GSM571001 | GPL1261 |
|
CD8+CX3CR1- DC
|
spleens
|
strain: Cx3cr1gfp/+ C57BL/6
bmp4 treated: -
dendritic cell: CD8+CX3CR1+
|
|
Sample_geo_accession | GSM571001
| Sample_status | Public on Jul 28 2010
| Sample_submission_date | Jul 27 2010
| Sample_last_update_date | Apr 10 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | After collagenase D digestion, spleens from Cx3cr1gfp/+ C57BL/6 mice were enriched for CD11c+ cells by magnetic separation according to the manufacturer’s protocol (MiltenyiBiotec GmbH). Splenic CD11chi cells were isolated using the FACS ARIA high-speed sorter (Becton-Dickinson).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | QIAGEN miniRNA extraction kit was used.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | According to Affymetrix manual
| Sample_hyb_protocol | According to Affymetrix manual
| Sample_scan_protocol | According to Affymetrix manual
| Sample_data_processing | MAS5
| Sample_platform_id | GPL1261
| Sample_contact_name | Steffen,,Jung
| Sample_contact_email | s.jung@weizmann.ac.il
| Sample_contact_laboratory | Steffen Jung
| Sample_contact_department | Immunology
| Sample_contact_institute | The weizmann Institute of Science
| Sample_contact_address | Herzel
| Sample_contact_city | REHOVOT
| Sample_contact_zip/postal_code | 76100
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM571nnn/GSM571001/suppl/GSM571001.CEL.gz
| Sample_relation | Reanalyzed by: GSE45704
| Sample_series_id | GSE23212
| Sample_data_row_count | 45101
| |
|
GSM571002 | GPL1261 |
|
CD4+ DC
|
spleens
|
strain: Cx3cr1gfp/+ C57BL/6
bmp4 treated: -
dendritic cell: CD4+
|
|
Sample_geo_accession | GSM571002
| Sample_status | Public on Jul 28 2010
| Sample_submission_date | Jul 27 2010
| Sample_last_update_date | Apr 10 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | After collagenase D digestion, spleens from Cx3cr1gfp/+ C57BL/6 mice were enriched for CD11c+ cells by magnetic separation according to the manufacturer’s protocol (MiltenyiBiotec GmbH). Splenic CD11chi cells were isolated using the FACS ARIA high-speed sorter (Becton-Dickinson).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | QIAGEN miniRNA extraction kit was used.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | According to Affymetrix manual
| Sample_hyb_protocol | According to Affymetrix manual
| Sample_scan_protocol | According to Affymetrix manual
| Sample_data_processing | MAS5
| Sample_platform_id | GPL1261
| Sample_contact_name | Steffen,,Jung
| Sample_contact_email | s.jung@weizmann.ac.il
| Sample_contact_laboratory | Steffen Jung
| Sample_contact_department | Immunology
| Sample_contact_institute | The weizmann Institute of Science
| Sample_contact_address | Herzel
| Sample_contact_city | REHOVOT
| Sample_contact_zip/postal_code | 76100
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM571nnn/GSM571002/suppl/GSM571002.CEL.gz
| Sample_relation | Reanalyzed by: GSE45704
| Sample_series_id | GSE23212
| Sample_data_row_count | 45101
| |
|
GSM571003 | GPL1261 |
|
DN DC
|
spleens
|
strain: Cx3cr1gfp/+ C57BL/6
bmp4 treated: -
dendritic cell: CD4+
|
|
Sample_geo_accession | GSM571003
| Sample_status | Public on Jul 28 2010
| Sample_submission_date | Jul 27 2010
| Sample_last_update_date | Apr 10 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_growth_protocol_ch1 | After collagenase D digestion, spleens from Cx3cr1gfp/+ C57BL/6 mice were enriched for CD11c+ cells by magnetic separation according to the manufacturer’s protocol (MiltenyiBiotec GmbH). Splenic CD11chi cells were isolated using the FACS ARIA high-speed sorter (Becton-Dickinson).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | QIAGEN miniRNA extraction kit was used.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | According to Affymetrix manual
| Sample_hyb_protocol | According to Affymetrix manual
| Sample_scan_protocol | According to Affymetrix manual
| Sample_data_processing | MAS5
| Sample_platform_id | GPL1261
| Sample_contact_name | Steffen,,Jung
| Sample_contact_email | s.jung@weizmann.ac.il
| Sample_contact_laboratory | Steffen Jung
| Sample_contact_department | Immunology
| Sample_contact_institute | The weizmann Institute of Science
| Sample_contact_address | Herzel
| Sample_contact_city | REHOVOT
| Sample_contact_zip/postal_code | 76100
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM571nnn/GSM571003/suppl/GSM571003.CEL.gz
| Sample_relation | Reanalyzed by: GSE45704
| Sample_series_id | GSE23212
| Sample_data_row_count | 45101
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
|
Filter results by number of probes |
|
|