Search results for the GEO ID: GSE23308  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM571905 | GPL1261 |
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Floxed Control, untreated, biological rep1
|
Unstimulated FC murine peritoneal macropahges
|
cell type: peritoneal macropahges
gender: male
strain: C57BL6/J
genotype/variation: MR fl / fl
treatment: No treatment
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Gene expression data from floxed control mouse peritoneal macrophages
|
| Sample_geo_accession | GSM571905
| | Sample_status | Public on Jul 30 2010
| | Sample_submission_date | Jul 29 2010
| | Sample_last_update_date | Jul 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Peritoneal macrophages were subsequently treated in the presence or absence of 1 µM Corticosterone for 24 hours.
| | Sample_growth_protocol_ch1 | Mouse peritoneal macrophages were isolated 4 days after an intra-peritoneal injection of aged 3% Brewer’s thioglycolate. Macrophages were then cultured in media containing 10% FBS and isolated by differential adherence.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an RNeasy kit (QIAGEN) following on-column DNase digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was biotinylated using the Ovation Biotin Labeling system from NuGen, Inc.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on Affymetrix Mouse Genome 430 2.0, washed and stained per manufacturer's instructions
| | Sample_scan_protocol | GeneArray scanner
| | Sample_data_processing | I used the affy and affycoretools package of Bioconductor version 2.2 for RMA normalization and log2 transformation with R version 2.7.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mort,,lab
| | Sample_contact_email | sduan@umich.edu
| | Sample_contact_phone | 734-615-9820
| | Sample_contact_laboratory | Mortensen
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 1150 W Med Ctr Dr
| | Sample_contact_city | ann arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM571nnn/GSM571905/suppl/GSM571905.CEL.gz
| | Sample_series_id | GSE23308
| | Sample_data_row_count | 45101
| | |
|
GSM571906 | GPL1261 |
|
Floxed Control, untreated, biological rep2
|
Unstimulated FC murine peritoneal macropahges
|
cell type: peritoneal macropahges
gender: male
strain: C57BL6/J
genotype/variation: MR fl / fl
treatment: No treatment
|
Gene expression data from floxed control mouse peritoneal macrophages
|
| Sample_geo_accession | GSM571906
| | Sample_status | Public on Jul 30 2010
| | Sample_submission_date | Jul 29 2010
| | Sample_last_update_date | Jul 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Peritoneal macrophages were subsequently treated in the presence or absence of 1 µM Corticosterone for 24 hours.
| | Sample_growth_protocol_ch1 | Mouse peritoneal macrophages were isolated 4 days after an intra-peritoneal injection of aged 3% Brewer’s thioglycolate. Macrophages were then cultured in media containing 10% FBS and isolated by differential adherence.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an RNeasy kit (QIAGEN) following on-column DNase digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was biotinylated using the Ovation Biotin Labeling system from NuGen, Inc.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on Affymetrix Mouse Genome 430 2.0, washed and stained per manufacturer's instructions
| | Sample_scan_protocol | GeneArray scanner
| | Sample_data_processing | I used the affy and affycoretools package of Bioconductor version 2.2 for RMA normalization and log2 transformation with R version 2.7.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mort,,lab
| | Sample_contact_email | sduan@umich.edu
| | Sample_contact_phone | 734-615-9820
| | Sample_contact_laboratory | Mortensen
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 1150 W Med Ctr Dr
| | Sample_contact_city | ann arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM571nnn/GSM571906/suppl/GSM571906.CEL.gz
| | Sample_series_id | GSE23308
| | Sample_data_row_count | 45101
| | |
|
GSM571907 | GPL1261 |
|
Floxed Control, corticosterone stimulated, biological rep1
|
Cort Stimulated FC murine peritoneal macrophages
|
cell type: peritoneal macropahges
gender: male
strain: C57BL6/J
genotype/variation: MR fl / fl
treatment: 24 hours of 1 µM Corticosterone
|
Gene expression data from floxed control mouse peritoneal macrophages stimulated with corticosterone
|
| Sample_geo_accession | GSM571907
| | Sample_status | Public on Jul 30 2010
| | Sample_submission_date | Jul 29 2010
| | Sample_last_update_date | Jul 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Peritoneal macrophages were subsequently treated in the presence or absence of 1 µM Corticosterone for 24 hours.
| | Sample_growth_protocol_ch1 | Mouse peritoneal macrophages were isolated 4 days after an intra-peritoneal injection of aged 3% Brewer’s thioglycolate. Macrophages were then cultured in media containing 10% FBS and isolated by differential adherence.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an RNeasy kit (QIAGEN) following on-column DNase digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was biotinylated using the Ovation Biotin Labeling system from NuGen, Inc.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on Affymetrix Mouse Genome 430 2.0, washed and stained per manufacturer's instructions
| | Sample_scan_protocol | GeneArray scanner
| | Sample_data_processing | I used the affy and affycoretools package of Bioconductor version 2.2 for RMA normalization and log2 transformation with R version 2.7.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mort,,lab
| | Sample_contact_email | sduan@umich.edu
| | Sample_contact_phone | 734-615-9820
| | Sample_contact_laboratory | Mortensen
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 1150 W Med Ctr Dr
| | Sample_contact_city | ann arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM571nnn/GSM571907/suppl/GSM571907.CEL.gz
| | Sample_series_id | GSE23308
| | Sample_data_row_count | 45101
| | |
|
GSM571908 | GPL1261 |
|
Floxed Control, corticosterone stimulated, biological rep2
|
Cort Stimulated FC murine peritoneal macrophages
|
cell type: peritoneal macropahges
gender: male
strain: C57BL6/J
genotype/variation: MR fl / fl
treatment: 24 hours of 1 µM Corticosterone
|
Gene expression data from floxed control mouse peritoneal macrophages stimulated with corticosterone
|
| Sample_geo_accession | GSM571908
| | Sample_status | Public on Jul 30 2010
| | Sample_submission_date | Jul 29 2010
| | Sample_last_update_date | Jul 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Peritoneal macrophages were subsequently treated in the presence or absence of 1 µM Corticosterone for 24 hours.
| | Sample_growth_protocol_ch1 | Mouse peritoneal macrophages were isolated 4 days after an intra-peritoneal injection of aged 3% Brewer’s thioglycolate. Macrophages were then cultured in media containing 10% FBS and isolated by differential adherence.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an RNeasy kit (QIAGEN) following on-column DNase digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was biotinylated using the Ovation Biotin Labeling system from NuGen, Inc.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on Affymetrix Mouse Genome 430 2.0, washed and stained per manufacturer's instructions
| | Sample_scan_protocol | GeneArray scanner
| | Sample_data_processing | I used the affy and affycoretools package of Bioconductor version 2.2 for RMA normalization and log2 transformation with R version 2.7.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mort,,lab
| | Sample_contact_email | sduan@umich.edu
| | Sample_contact_phone | 734-615-9820
| | Sample_contact_laboratory | Mortensen
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 1150 W Med Ctr Dr
| | Sample_contact_city | ann arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM571nnn/GSM571908/suppl/GSM571908.CEL.gz
| | Sample_series_id | GSE23308
| | Sample_data_row_count | 45101
| | |
|
GSM571909 | GPL1261 |
|
MR knockout, untreated, biological rep1
|
Unstimulated MRKO murine peritoneal macrophages
|
cell type: peritoneal macropahges
gender: male
strain: C57BL6/J
genotype/variation: MR fl / fl, LysM cre
treatment: No treatment
|
Gene expression data from mineralocorticoid receptor knockout mouse peritoneal macrophages
|
| Sample_geo_accession | GSM571909
| | Sample_status | Public on Jul 30 2010
| | Sample_submission_date | Jul 29 2010
| | Sample_last_update_date | Jul 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Peritoneal macrophages were subsequently treated in the presence or absence of 1 µM Corticosterone for 24 hours.
| | Sample_growth_protocol_ch1 | Mouse peritoneal macrophages were isolated 4 days after an intra-peritoneal injection of aged 3% Brewer’s thioglycolate. Macrophages were then cultured in media containing 10% FBS and isolated by differential adherence.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an RNeasy kit (QIAGEN) following on-column DNase digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was biotinylated using the Ovation Biotin Labeling system from NuGen, Inc.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on Affymetrix Mouse Genome 430 2.0, washed and stained per manufacturer's instructions
| | Sample_scan_protocol | GeneArray scanner
| | Sample_data_processing | I used the affy and affycoretools package of Bioconductor version 2.2 for RMA normalization and log2 transformation with R version 2.7.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mort,,lab
| | Sample_contact_email | sduan@umich.edu
| | Sample_contact_phone | 734-615-9820
| | Sample_contact_laboratory | Mortensen
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 1150 W Med Ctr Dr
| | Sample_contact_city | ann arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM571nnn/GSM571909/suppl/GSM571909.CEL.gz
| | Sample_series_id | GSE23308
| | Sample_data_row_count | 45101
| | |
|
GSM571910 | GPL1261 |
|
MR knockout, untreated, biological rep2
|
Unstimulated MRKO murine peritoneal macrophages
|
cell type: peritoneal macropahges
gender: male
strain: C57BL6/J
genotype/variation: MR fl / fl, LysM cre
treatment: No treatment
|
Gene expression data from mineralocorticoid receptor knockout mouse peritoneal macrophages
|
| Sample_geo_accession | GSM571910
| | Sample_status | Public on Jul 30 2010
| | Sample_submission_date | Jul 29 2010
| | Sample_last_update_date | Jul 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Peritoneal macrophages were subsequently treated in the presence or absence of 1 µM Corticosterone for 24 hours.
| | Sample_growth_protocol_ch1 | Mouse peritoneal macrophages were isolated 4 days after an intra-peritoneal injection of aged 3% Brewer’s thioglycolate. Macrophages were then cultured in media containing 10% FBS and isolated by differential adherence.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an RNeasy kit (QIAGEN) following on-column DNase digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was biotinylated using the Ovation Biotin Labeling system from NuGen, Inc.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on Affymetrix Mouse Genome 430 2.0, washed and stained per manufacturer's instructions
| | Sample_scan_protocol | GeneArray scanner
| | Sample_data_processing | I used the affy and affycoretools package of Bioconductor version 2.2 for RMA normalization and log2 transformation with R version 2.7.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mort,,lab
| | Sample_contact_email | sduan@umich.edu
| | Sample_contact_phone | 734-615-9820
| | Sample_contact_laboratory | Mortensen
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 1150 W Med Ctr Dr
| | Sample_contact_city | ann arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM571nnn/GSM571910/suppl/GSM571910.CEL.gz
| | Sample_series_id | GSE23308
| | Sample_data_row_count | 45101
| | |
|
GSM571911 | GPL1261 |
|
MR knockout, corticosterone stimulated, biological rep1
|
Cort Stimulated MRKO murine peritoneal macrophages
|
cell type: peritoneal macropahges
gender: male
strain: C57BL6/J
genotype/variation: MR fl / fl, LysM cre
treatment: 24 hours of 1 µM Corticosterone
|
Gene expression data from mineralocorticoid receptor knockout mouse peritoneal macrophages stimulated with corticosterone
|
| Sample_geo_accession | GSM571911
| | Sample_status | Public on Jul 30 2010
| | Sample_submission_date | Jul 29 2010
| | Sample_last_update_date | Jul 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Peritoneal macrophages were subsequently treated in the presence or absence of 1 µM Corticosterone for 24 hours.
| | Sample_growth_protocol_ch1 | Mouse peritoneal macrophages were isolated 4 days after an intra-peritoneal injection of aged 3% Brewer’s thioglycolate. Macrophages were then cultured in media containing 10% FBS and isolated by differential adherence.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an RNeasy kit (QIAGEN) following on-column DNase digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was biotinylated using the Ovation Biotin Labeling system from NuGen, Inc.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on Affymetrix Mouse Genome 430 2.0, washed and stained per manufacturer's instructions
| | Sample_scan_protocol | GeneArray scanner
| | Sample_data_processing | I used the affy and affycoretools package of Bioconductor version 2.2 for RMA normalization and log2 transformation with R version 2.7.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mort,,lab
| | Sample_contact_email | sduan@umich.edu
| | Sample_contact_phone | 734-615-9820
| | Sample_contact_laboratory | Mortensen
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 1150 W Med Ctr Dr
| | Sample_contact_city | ann arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM571nnn/GSM571911/suppl/GSM571911.CEL.gz
| | Sample_series_id | GSE23308
| | Sample_data_row_count | 45101
| | |
|
GSM571912 | GPL1261 |
|
MR knockout, corticosterone stimulated, biological rep2
|
Cort Stimulated MRKO murine peritoneal macrophages
|
cell type: peritoneal macropahges
gender: male
strain: C57BL6/J
genotype/variation: MR fl / fl, LysM cre
treatment: 24 hours of 1 µM Corticosterone
|
Gene expression data from mineralocorticoid receptor knockout mouse peritoneal macrophages stimulated with corticosterone
|
| Sample_geo_accession | GSM571912
| | Sample_status | Public on Jul 30 2010
| | Sample_submission_date | Jul 29 2010
| | Sample_last_update_date | Jul 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Peritoneal macrophages were subsequently treated in the presence or absence of 1 µM Corticosterone for 24 hours.
| | Sample_growth_protocol_ch1 | Mouse peritoneal macrophages were isolated 4 days after an intra-peritoneal injection of aged 3% Brewer’s thioglycolate. Macrophages were then cultured in media containing 10% FBS and isolated by differential adherence.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using an RNeasy kit (QIAGEN) following on-column DNase digestion.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was biotinylated using the Ovation Biotin Labeling system from NuGen, Inc.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized on Affymetrix Mouse Genome 430 2.0, washed and stained per manufacturer's instructions
| | Sample_scan_protocol | GeneArray scanner
| | Sample_data_processing | I used the affy and affycoretools package of Bioconductor version 2.2 for RMA normalization and log2 transformation with R version 2.7.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | mort,,lab
| | Sample_contact_email | sduan@umich.edu
| | Sample_contact_phone | 734-615-9820
| | Sample_contact_laboratory | Mortensen
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 1150 W Med Ctr Dr
| | Sample_contact_city | ann arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM571nnn/GSM571912/suppl/GSM571912.CEL.gz
| | Sample_series_id | GSE23308
| | Sample_data_row_count | 45101
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