Search results for the GEO ID: GSE2331 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM43095 | GPL341 |
|
pool of a10, a11, a4
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats a10, a11, and a4 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43095
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43095/suppl/GSM43095.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43096 | GPL341 |
|
pool of a10, a11
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats a10 and a11 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43096
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43096/suppl/GSM43096.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43097 | GPL341 |
|
individual rat a10
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat a10 in proestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43097
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43097/suppl/GSM43097.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43098 | GPL341 |
|
individual rat a11
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat a11 in estrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43098
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43098/suppl/GSM43098.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43099 | GPL341 |
|
pool of a12, a14, a7
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats a12, a14, and a7 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43099
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43099/suppl/GSM43099.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43100 | GPL341 |
|
pool of a12, a14
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats a12 and a14 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43100
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43100/suppl/GSM43100.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43101 | GPL341 |
|
individual rat a12
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat a12 in estrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43101
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43101/suppl/GSM43101.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43102 | GPL341 |
|
individual rat a14
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat a14 in proestrus or estrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43102
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43102/suppl/GSM43102.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43103 | GPL341 |
|
pool of a2, a3, a5
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats a2, a3 and a5 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43103
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43103/suppl/GSM43103.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43104 | GPL341 |
|
pool of a2, a3
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats a2 and a3 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43104
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43104/suppl/GSM43104.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43105 | GPL341 |
|
individual rat a2
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat a2 in estrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43105
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43105/suppl/GSM43105.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43106 | GPL341 |
|
individual rat a3
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat a3 in proestrus or estrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43106
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43106/suppl/GSM43106.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43107 | GPL341 |
|
individual rat a3, technical rep1
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43107
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43107/suppl/GSM43107.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43108 | GPL341 |
|
individual rat a3, technical rep2
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43108
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43108/suppl/GSM43108.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43109 | GPL341 |
|
pool of a4, a7
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats a4 and a7 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43109
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43109/suppl/GSM43109.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43110 | GPL341 |
|
individual rat a4
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat a4 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43110
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43110/suppl/GSM43110.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43111 | GPL341 |
|
pool of a5, a6
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats a5 and a6 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43111
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43111/suppl/GSM43111.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43112 | GPL341 |
|
individual rat a5
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat a5 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43112
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43112/suppl/GSM43112.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43113 | GPL341 |
|
pool of a6, a8, a9
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats a6, a8, and a9 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43113
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43113/suppl/GSM43113.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43114 | GPL341 |
|
individual rat a6
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat a6 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43114
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43114/suppl/GSM43114.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43115 | GPL341 |
|
individual rat a7
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat a7 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43115
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43115/suppl/GSM43115.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43116 | GPL341 |
|
pool of a8, a9
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats a8 and a9 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43116
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43116/suppl/GSM43116.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43117 | GPL341 |
|
individual rat a8
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat a8 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43117
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43117/suppl/GSM43117.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43118 | GPL341 |
|
individual rat a9
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat a9 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43118
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43118/suppl/GSM43118.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43119 | GPL341 |
|
pool of 12 a-individual rats (aliquot aq)
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from the 12 individual rats in group a to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43119
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43119/suppl/GSM43119.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43120 | GPL341 |
|
aliquot aq, technical rep1
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from the 12 individual rats in group a to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43120
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 29 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43120/suppl/GSM43120.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43121 | GPL341 |
|
aliquot aq, technical rep2
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from the 12 individual rats in group a to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43121
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43121/suppl/GSM43121.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43122 | GPL341 |
|
aliquot aq, technical rep3
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from the 12 individual rats in group a to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43122
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43122/suppl/GSM43122.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43123 | GPL341 |
|
pool of b10, b11, b13
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats b10, b11, and b13 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43123
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43123/suppl/GSM43123.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43124 | GPL341 |
|
pool of b10, b11
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats b10 and b11 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43124
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43124/suppl/GSM43124.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43125 | GPL341 |
|
individual rat b10
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat b10 in estrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43125
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43125/suppl/GSM43125.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43126 | GPL341 |
|
individual rat b11
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat b11 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43126
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43126/suppl/GSM43126.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43127 | GPL341 |
|
pool of b12, b14, b15
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats b12, b14 and b15 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43127
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43127/suppl/GSM43127.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43128 | GPL341 |
|
pool of b12, b14
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats b12 and b14 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43128
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43128/suppl/GSM43128.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43129 | GPL341 |
|
individual rat b12
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat b12 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43129
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43129/suppl/GSM43129.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43130 | GPL341 |
|
pool of b13, b15
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats b13 and b15 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43130
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43130/suppl/GSM43130.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43131 | GPL341 |
|
individual rat b13
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat b13 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43131
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43131/suppl/GSM43131.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43132 | GPL341 |
|
individual rat b14
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat b14 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43132
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43132/suppl/GSM43132.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43133 | GPL341 |
|
individual rat b15
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat b15 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43133
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43133/suppl/GSM43133.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43134 | GPL341 |
|
pool of b2, b3, b5
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats b2, b3 and b5 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43134
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43134/suppl/GSM43134.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43135 | GPL341 |
|
pool of b2, b3
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats b2 and b3 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43135
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43135/suppl/GSM43135.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43136 | GPL341 |
|
individual rat b2
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat b2 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43136
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43136/suppl/GSM43136.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43137 | GPL341 |
|
individual rat b3
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat b3 in estrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43137
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43137/suppl/GSM43137.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43138 | GPL341 |
|
individual rat b3, technical rep1
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43138
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43138/suppl/GSM43138.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43139 | GPL341 |
|
individual rat b3, technical rep2
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43139
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43139/suppl/GSM43139.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43140 | GPL341 |
|
pool of b5, b6
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats b5 and b6 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43140
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43140/suppl/GSM43140.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43141 | GPL341 |
|
individual rat b5
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat b5 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43141
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43141/suppl/GSM43141.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43142 | GPL341 |
|
pool of b6, b8, b9
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats b6, b8 and b9 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43142
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43142/suppl/GSM43142.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43143 | GPL341 |
|
individual rat b6
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat b6 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43143
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43143/suppl/GSM43143.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43144 | GPL341 |
|
pool of b8, b9
|
pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from individual rats b8 and b9 to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43144
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43144/suppl/GSM43144.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43145 | GPL341 |
|
individual rat b8
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat b8 in proestrus or estrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43145
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43145/suppl/GSM43145.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
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GSM43146 | GPL341 |
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individual rat b9
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individual rat mammary gland (Female Wistar Furth Rat)
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|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Hybridization used 10 mu g of the fragmented cRNA targets. Individual rat b9 in diestrus.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43146
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43146/suppl/GSM43146.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43147 | GPL341 |
|
pool of 12 b-individual rats (aliquot bq)
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pooled mammary glands (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from the 12 individual rats in group b to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43147
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43147/suppl/GSM43147.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43148 | GPL341 |
|
aliquot bq, technical rep1
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from the 12 individual rats in group b to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43148
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43148/suppl/GSM43148.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43149 | GPL341 |
|
aliquot bq, technical rep2
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from the 12 individual rats in group b to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43149
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43149/suppl/GSM43149.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
GSM43150 | GPL341 |
|
aliquot bq, technical rep3
|
individual rat mammary gland (Female Wistar Furth Rat)
|
|
total RNA was extracted from individual rat mammary glands; 5 mu g of each RNA sample was reverse transcribed, synthesized to double-stranded cDNA, and then transcribed to biotin-labeled cRNA targets which were then fragmented. Equal amounts of fragmented targets were combined from the 12 individual rats in group b to give a total of 10 mu g of the fragmented cRNA targets.
a is RXR treatment, b is control
|
Sample_geo_accession | GSM43150
| Sample_status | Public on Feb 25 2005
| Sample_submission_date | Feb 23 2005
| Sample_last_update_date | May 27 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL341
| Sample_contact_name | Christina,,Kendziorski
| Sample_contact_email | kendzior@biostat.wisc.edu
| Sample_contact_phone | 608-262-3146
| Sample_contact_department | Biostatistics and Medical Informatics
| Sample_contact_institute | University of Wisconsin
| Sample_contact_address | 1300 University Avenue (6729 MSC)
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM43nnn/GSM43150/suppl/GSM43150.CEL.gz
| Sample_series_id | GSE2331
| Sample_data_row_count | 15923
| |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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