Search results for the GEO ID: GSE23343  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM572800 | GPL570 |
|
Liver_normoglycima_no.1
|
Liver, fasting
|
tissue: liver
gender: male
disease status: normal glucose tolerance
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572800
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572800/suppl/GSM572800.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572801 | GPL570 |
|
Liver_normoglycima_no.2
|
Liver, fasting
|
tissue: liver
gender: male
disease status: normal glucose tolerance
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572801
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572801/suppl/GSM572801.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572802 | GPL570 |
|
Liver_normoglycima_no.3
|
Liver, fasting
|
tissue: liver
gender: female
disease status: normal glucose tolerance
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572802
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572802/suppl/GSM572802.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572803 | GPL570 |
|
Liver_normoglycima_no.4
|
Liver, fasting
|
tissue: liver
gender: female
disease status: normal glucose tolerance
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572803
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572803/suppl/GSM572803.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572804 | GPL570 |
|
Liver_normoglycima_no.5
|
Liver, fasting
|
tissue: liver
gender: male
disease status: normal glucose tolerance
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572804
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572804/suppl/GSM572804.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572805 | GPL570 |
|
Liver_normoglycima_no.6
|
Liver, fasting
|
tissue: liver
gender: male
disease status: normal glucose tolerance
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572805
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572805/suppl/GSM572805.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572806 | GPL570 |
|
Liver_normoglycima_no.7
|
Liver, fasting
|
tissue: liver
gender: female
disease status: normal glucose tolerance
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572806
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572806/suppl/GSM572806.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572807 | GPL570 |
|
Liver_hyperglycima_no.1
|
Liver, fasting
|
tissue: liver
gender: female
disease status: type 2 diabetes
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572807
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572807/suppl/GSM572807.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572808 | GPL570 |
|
Liver_hyperglycima_no.2
|
Liver, fasting
|
tissue: liver
gender: male
disease status: type 2 diabetes
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572808
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572808/suppl/GSM572808.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572809 | GPL570 |
|
Liver_hyperglycima_no.3
|
Liver, fasting
|
tissue: liver
gender: male
disease status: type 2 diabetes
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572809
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572809/suppl/GSM572809.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572810 | GPL570 |
|
Liver_hyperglycima_no.4
|
Liver, fasting
|
tissue: liver
gender: female
disease status: type 2 diabetes
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572810
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572810/suppl/GSM572810.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572811 | GPL570 |
|
Liver_hyperglycima_no.5
|
Liver, fasting
|
tissue: liver
gender: male
disease status: type 2 diabetes
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572811
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572811/suppl/GSM572811.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572812 | GPL570 |
|
Liver_hyperglycima_no.6
|
Liver, fasting
|
tissue: liver
gender: female
disease status: type 2 diabetes
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572812
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572812/suppl/GSM572812.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572813 | GPL570 |
|
Liver_hyperglycima_no.7
|
Liver, fasting
|
tissue: liver
gender: male
disease status: type 2 diabetes
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572813
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572813/suppl/GSM572813.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572814 | GPL570 |
|
Liver_hyperglycima_no.8
|
Liver, fasting
|
tissue: liver
gender: female
disease status: type 2 diabetes
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572814
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572814/suppl/GSM572814.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572815 | GPL570 |
|
Liver_hyperglycima_no.9
|
Liver, fasting
|
tissue: liver
gender: male
disease status: type 2 diabetes
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572815
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572815/suppl/GSM572815.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
GSM572816 | GPL570 |
|
Liver_hyperglycima_no.10
|
Liver, fasting
|
tissue: liver
gender: male
disease status: type 2 diabetes
|
Gene expression data from human liver.
|
| Sample_geo_accession | GSM572816
| | Sample_status | Public on Jul 31 2010
| | Sample_submission_date | Jul 30 2010
| | Sample_last_update_date | Jul 30 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Patients with type 2 diabetes were treated with diet therapy alone or insulin; no patients were receiving any oral hypoglycaemic agent. Participants receiving statins, ACE inhibitors or angiotensin II receptor blockers were excluded.
| | Sample_growth_protocol_ch1 | Hepatic tissues were obtained with percutaneous needle liver biopsy, and immediately frozen in liquid nitrogen and stored at −80°C until use.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with a kit (Micro RNA Isolation Kit; Stratagene, La Jolla, CA, USA), purified with RNeasy MiniElute Cleanup Kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A total of 100 ng of total RNA was labelled according to the small sample labelling protocol recommended by the manufacturer.
| | Sample_hyb_protocol | Ten micrograms of labelled and fragmented cRNA was hybridised onto a Human Genome U133 Plus 2.0 Array (Affymetrix) for 16 h at 45°C.
| | Sample_scan_protocol | Chips were scanned by using GeneChip Scanner3000, Affymetrix.
| | Sample_data_processing | A scanned image was quantified using GCOS version 1.1.1 (GeneChip Operating Software; Affymetrix) with the default parameters for the statistical algorithm and all probe sets scaled to a target intensity of 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Hirofumi,,Misu
| | Sample_contact_email | hmisu@m-kanazawa.jp
| | Sample_contact_phone | +81-76-265-2234
| | Sample_contact_institute | Kanazawa University
| | Sample_contact_address | 13-1 Takaramachi
| | Sample_contact_city | Kanazawa
| | Sample_contact_zip/postal_code | 920-8641
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM572nnn/GSM572816/suppl/GSM572816.cel.gz
| | Sample_series_id | GSE23343
| | Sample_data_row_count | 54613
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
