Search results for the GEO ID: GSE23362  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM573291 | GPL570 |
|
Control group, replicate 1 [GY_Con1]
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MDA-MB-231 cells transfected with negative control siRNA
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cell line: MDA-MB-231
cell type: Breast cancer cells
group: Control group
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Gene expression data from MDA-MB-231 cells transfected with negative control siRNA
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| Sample_geo_accession | GSM573291
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Aug 02 2010
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were transfected with SDC1-siRNA or a negative control siRNA.
| | Sample_growth_protocol_ch1 | MDA-MB-231 cells were cultured at 37°C in a humidified atmosphere with 5% carbon dioxide.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Qiagen RNeasy Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 3.6 µg of total RNA.
| | Sample_hyb_protocol | Fragmented cRNA was hybridised at 45°C for 16 hours to Affymetrix HG U133 Plus 2.0 GeneChips, followed by washing and staining in an Affymetrix FS450 fluidics station.
| | Sample_scan_protocol | GeneChips were scanned using a GCOS 7000 7G scanner.
| | Sample_data_processing | Data were analysed using GeneSpring GX11.0 with RMA normalisation to median signal intensity.
| | Sample_platform_id | GPL570
| | Sample_contact_name | George,W,Yip
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 4 Medical Drive, Block MD10
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117597
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573291/suppl/GSM573291.CEL.gz
| | Sample_series_id | GSE23362
| | Sample_data_row_count | 54675
| | |
|
GSM573292 | GPL570 |
|
Control group, replicate 2 [GY_Con2]
|
MDA-MB-231 cells transfected with negative control siRNA
|
cell line: MDA-MB-231
cell type: Breast cancer cells
group: Control group
|
Gene expression data from MDA-MB-231 cells transfected with negative control siRNA
|
| Sample_geo_accession | GSM573292
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Aug 02 2010
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were transfected with SDC1-siRNA or a negative control siRNA.
| | Sample_growth_protocol_ch1 | MDA-MB-231 cells were cultured at 37°C in a humidified atmosphere with 5% carbon dioxide.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Qiagen RNeasy Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 3.6 µg of total RNA.
| | Sample_hyb_protocol | Fragmented cRNA was hybridised at 45°C for 16 hours to Affymetrix HG U133 Plus 2.0 GeneChips, followed by washing and staining in an Affymetrix FS450 fluidics station.
| | Sample_scan_protocol | GeneChips were scanned using a GCOS 7000 7G scanner.
| | Sample_data_processing | Data were analysed using GeneSpring GX11.0 with RMA normalisation to median signal intensity.
| | Sample_platform_id | GPL570
| | Sample_contact_name | George,W,Yip
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 4 Medical Drive, Block MD10
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117597
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573292/suppl/GSM573292.CEL.gz
| | Sample_series_id | GSE23362
| | Sample_data_row_count | 54675
| | |
|
GSM573293 | GPL570 |
|
Control group, replicate 3 [GY_Con3]
|
MDA-MB-231 cells transfected with negative control siRNA
|
cell line: MDA-MB-231
cell type: Breast cancer cells
group: Control group
|
Gene expression data from MDA-MB-231 cells transfected with negative control siRNA
|
| Sample_geo_accession | GSM573293
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Aug 02 2010
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were transfected with SDC1-siRNA or a negative control siRNA.
| | Sample_growth_protocol_ch1 | MDA-MB-231 cells were cultured at 37°C in a humidified atmosphere with 5% carbon dioxide.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Qiagen RNeasy Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 3.6 µg of total RNA.
| | Sample_hyb_protocol | Fragmented cRNA was hybridised at 45°C for 16 hours to Affymetrix HG U133 Plus 2.0 GeneChips, followed by washing and staining in an Affymetrix FS450 fluidics station.
| | Sample_scan_protocol | GeneChips were scanned using a GCOS 7000 7G scanner.
| | Sample_data_processing | Data were analysed using GeneSpring GX11.0 with RMA normalisation to median signal intensity.
| | Sample_platform_id | GPL570
| | Sample_contact_name | George,W,Yip
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 4 Medical Drive, Block MD10
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117597
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573293/suppl/GSM573293.CEL.gz
| | Sample_series_id | GSE23362
| | Sample_data_row_count | 54675
| | |
|
GSM573294 | GPL570 |
|
SDC1-silenced group, replicate 1
|
MDA-MB-231 cells transfected with SDC1-siRNA
|
cell line: MDA-MB-231
cell type: Breast cancer cells
group: SDC1-silenced group
|
Gene expression data from MDA-MB-231 cells transfected with SDC1-siRNA
|
| Sample_geo_accession | GSM573294
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Aug 02 2010
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were transfected with SDC1-siRNA or a negative control siRNA.
| | Sample_growth_protocol_ch1 | MDA-MB-231 cells were cultured at 37°C in a humidified atmosphere with 5% carbon dioxide.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Qiagen RNeasy Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 3.6 µg of total RNA.
| | Sample_hyb_protocol | Fragmented cRNA was hybridised at 45°C for 16 hours to Affymetrix HG U133 Plus 2.0 GeneChips, followed by washing and staining in an Affymetrix FS450 fluidics station.
| | Sample_scan_protocol | GeneChips were scanned using a GCOS 7000 7G scanner.
| | Sample_data_processing | Data were analysed using GeneSpring GX11.0 with RMA normalisation to median signal intensity.
| | Sample_platform_id | GPL570
| | Sample_contact_name | George,W,Yip
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 4 Medical Drive, Block MD10
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117597
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573294/suppl/GSM573294.CEL.gz
| | Sample_series_id | GSE23362
| | Sample_data_row_count | 54675
| | |
|
GSM573295 | GPL570 |
|
SDC1-silenced group, replicate 2
|
MDA-MB-231 cells transfected with SDC1-siRNA
|
cell line: MDA-MB-231
cell type: Breast cancer cells
group: SDC1-silenced group
|
Gene expression data from MDA-MB-231 cells transfected with SDC1-siRNA
|
| Sample_geo_accession | GSM573295
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Aug 02 2010
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were transfected with SDC1-siRNA or a negative control siRNA.
| | Sample_growth_protocol_ch1 | MDA-MB-231 cells were cultured at 37°C in a humidified atmosphere with 5% carbon dioxide.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Qiagen RNeasy Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 3.6 µg of total RNA.
| | Sample_hyb_protocol | Fragmented cRNA was hybridised at 45°C for 16 hours to Affymetrix HG U133 Plus 2.0 GeneChips, followed by washing and staining in an Affymetrix FS450 fluidics station.
| | Sample_scan_protocol | GeneChips were scanned using a GCOS 7000 7G scanner.
| | Sample_data_processing | Data were analysed using GeneSpring GX11.0 with RMA normalisation to median signal intensity.
| | Sample_platform_id | GPL570
| | Sample_contact_name | George,W,Yip
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 4 Medical Drive, Block MD10
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117597
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573295/suppl/GSM573295.CEL.gz
| | Sample_series_id | GSE23362
| | Sample_data_row_count | 54675
| | |
|
GSM573296 | GPL570 |
|
SDC1-silenced group, replicate 3
|
MDA-MB-231 cells transfected with SDC1-siRNA
|
cell line: MDA-MB-231
cell type: Breast cancer cells
group: SDC1-silenced group
|
Gene expression data from MDA-MB-231 cells transfected with SDC1-siRNA
|
| Sample_geo_accession | GSM573296
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Aug 02 2010
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were transfected with SDC1-siRNA or a negative control siRNA.
| | Sample_growth_protocol_ch1 | MDA-MB-231 cells were cultured at 37°C in a humidified atmosphere with 5% carbon dioxide.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Qiagen RNeasy Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 3.6 µg of total RNA.
| | Sample_hyb_protocol | Fragmented cRNA was hybridised at 45°C for 16 hours to Affymetrix HG U133 Plus 2.0 GeneChips, followed by washing and staining in an Affymetrix FS450 fluidics station.
| | Sample_scan_protocol | GeneChips were scanned using a GCOS 7000 7G scanner.
| | Sample_data_processing | Data were analysed using GeneSpring GX11.0 with RMA normalisation to median signal intensity.
| | Sample_platform_id | GPL570
| | Sample_contact_name | George,W,Yip
| | Sample_contact_institute | National University of Singapore
| | Sample_contact_address | 4 Medical Drive, Block MD10
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 117597
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573296/suppl/GSM573296.CEL.gz
| | Sample_series_id | GSE23362
| | Sample_data_row_count | 54675
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