Search results for the GEO ID: GSE23376 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM573426 | GPL570 |
|
Patient # 1
|
Frozen melanoma tumor biopsy
|
gender: Unknown
age: Unknown
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573426
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573426/suppl/GSM573426.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573427 | GPL570 |
|
Patient # 2
|
Frozen melanoma tumor biopsy
|
gender: M
age: 57
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573427
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573427/suppl/GSM573427.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573428 | GPL570 |
|
Patient # 3
|
Frozen melanoma tumor biopsy
|
gender: M
age: 56
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573428
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573428/suppl/GSM573428.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573429 | GPL570 |
|
Patient # 4
|
Frozen melanoma tumor biopsy
|
gender: F
age: 50
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573429
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573429/suppl/GSM573429.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573430 | GPL570 |
|
Patient # 5
|
Frozen melanoma tumor biopsy
|
gender: M
age: 64
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573430
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573430/suppl/GSM573430.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573431 | GPL570 |
|
Patient # 6
|
Frozen melanoma tumor biopsy
|
gender: F
age: 61
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573431
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573431/suppl/GSM573431.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573432 | GPL570 |
|
Patient # 7
|
Frozen melanoma tumor biopsy
|
gender: F
age: Unknown
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573432
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573432/suppl/GSM573432.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573433 | GPL570 |
|
Patient # 8
|
Frozen melanoma tumor biopsy
|
gender: M
age: 41
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573433
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573433/suppl/GSM573433.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573434 | GPL570 |
|
Patient # 9
|
Frozen melanoma tumor biopsy
|
gender: F
age: 56
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573434
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573434/suppl/GSM573434.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573435 | GPL570 |
|
Patient # 10
|
Frozen melanoma tumor biopsy
|
gender: M
age: 64
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573435
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573435/suppl/GSM573435.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573436 | GPL570 |
|
Patient # 11
|
Frozen melanoma tumor biopsy
|
gender: F
age: 62
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573436
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573436/suppl/GSM573436.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573437 | GPL570 |
|
Patient # 12
|
Frozen melanoma tumor biopsy
|
gender: M
age: 57
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573437
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573437/suppl/GSM573437.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573438 | GPL570 |
|
Patient # 13
|
Frozen melanoma tumor biopsy
|
gender: M
age: 85
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573438
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573438/suppl/GSM573438.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573439 | GPL570 |
|
Patient # 14
|
Frozen melanoma tumor biopsy
|
gender: M
age: 85
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573439
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573439/suppl/GSM573439.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573440 | GPL570 |
|
Patient # 15
|
Frozen melanoma tumor biopsy
|
gender: M
age: 67
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573440
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573440/suppl/GSM573440.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573441 | GPL570 |
|
Patient # 16
|
Frozen melanoma tumor biopsy
|
gender: M
age: 63
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573441
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573441/suppl/GSM573441.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573442 | GPL570 |
|
Patient # 17
|
Frozen melanoma tumor biopsy
|
gender: M
age: 46
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573442
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573442/suppl/GSM573442.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573443 | GPL570 |
|
Patient # 18
|
Frozen melanoma tumor biopsy
|
gender: F
age: 66
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573443
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573443/suppl/GSM573443.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573444 | GPL570 |
|
Patient # 19
|
Frozen melanoma tumor biopsy
|
gender: F
age: 80
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573444
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573444/suppl/GSM573444.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573445 | GPL570 |
|
Patient # 20
|
Frozen melanoma tumor biopsy
|
gender: M
age: 56
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573445
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573445/suppl/GSM573445.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573446 | GPL570 |
|
Patient # 21
|
Frozen melanoma tumor biopsy
|
gender: F
age: 55
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573446
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573446/suppl/GSM573446.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
|
GSM573447 | GPL570 |
|
Patient # 22
|
Frozen melanoma tumor biopsy
|
gender: M
age: 85
|
Gene expression data from tissue samples of frozen melanoma tumor biopsies
|
Sample_geo_accession | GSM573447
| Sample_status | Public on Oct 01 2010
| Sample_submission_date | Aug 02 2010
| Sample_last_update_date | Aug 02 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | frozen tissue sections of melanoma biopsies from stage IV melanoma patients
| Sample_growth_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA extraction kit used according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Partek GS 6.4 software (St. Louis, MO) using GCRMA normalization algorithm
| Sample_platform_id | GPL570
| Sample_contact_name | Alexey,Aleksandrovich,Leontovich
| Sample_contact_email | leontovich.alexey@mayo.edu
| Sample_contact_phone | 507-284-4850
| Sample_contact_fax | 507-538-0850
| Sample_contact_laboratory | Biomedical Statistics and Informatics
| Sample_contact_department | Health Science Research
| Sample_contact_institute | Mayo Clinic
| Sample_contact_address | 200 First street
| Sample_contact_city | Rochester
| Sample_contact_state | MN
| Sample_contact_zip/postal_code | 55902
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM573nnn/GSM573447/suppl/GSM573447.CEL.gz
| Sample_series_id | GSE23376
| Sample_data_row_count | 54675
| |
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Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
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