Search results for the GEO ID: GSE23450 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM575346 | GPL570 |
|
Huh7 CD133+, MAS5
|
Huh7 CD133+
|
cell type: HCC
cell line: Huh7
|
MAS5
|
Sample_geo_accession | GSM575346
| Sample_status | Public on Apr 05 2012
| Sample_submission_date | Aug 06 2010
| Sample_last_update_date | Apr 05 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | CD133+ and CD133- cells sorted from Huh7 HCC cells using flow cytometry cell sorting technique
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| Sample_label_protocol_ch1 | Ambion MessageAmp II-Biotin Enhanced (Cat #1791)
| Sample_hyb_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| Sample_hyb_protocol | According to Affymetrix protocol
| Sample_scan_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| Sample_scan_protocol | According to Affymetrix protocol
| Sample_data_processing | The data were analyzed with MAS5 using GCOS Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Stephanie,,Ma
| Sample_contact_email | stefma@hkucc.hku.hk
| Sample_contact_department | Pathology and Clinical Oncology
| Sample_contact_institute | University of Hong Kong
| Sample_contact_address | Rm 56, 10/F, Lab Block, Faculty of Medicine Bldg, 21 Sassoon Rd, Pok Fu Lam
| Sample_contact_city | Hong Kong
| Sample_contact_zip/postal_code | NA
| Sample_contact_country | Hong Kong
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575346/suppl/GSM575346_Huh7-CD133+ve.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575346/suppl/GSM575346_Huh7-CD133+ve.MAS5.CHP.gz
| Sample_relation | Reanalysis of: GSM575348
| Sample_series_id | GSE23450
| Sample_data_row_count | 54675
| |
|
GSM575347 | GPL570 |
|
Huh7 CD133-, MAS5
|
Huh7 CD133-
|
cell type: HCC
cell line: Huh7
|
MAS5
|
Sample_geo_accession | GSM575347
| Sample_status | Public on Apr 05 2012
| Sample_submission_date | Aug 06 2010
| Sample_last_update_date | Apr 05 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | CD133+ and CD133- cells sorted from Huh7 HCC cells using flow cytometry cell sorting technique
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| Sample_label_protocol_ch1 | Ambion MessageAmp II-Biotin Enhanced (Cat #1791)
| Sample_hyb_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| Sample_hyb_protocol | According to Affymetrix protocol
| Sample_scan_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| Sample_scan_protocol | According to Affymetrix protocol
| Sample_data_processing | The data were analyzed with MAS5 using GCOS Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Stephanie,,Ma
| Sample_contact_email | stefma@hkucc.hku.hk
| Sample_contact_department | Pathology and Clinical Oncology
| Sample_contact_institute | University of Hong Kong
| Sample_contact_address | Rm 56, 10/F, Lab Block, Faculty of Medicine Bldg, 21 Sassoon Rd, Pok Fu Lam
| Sample_contact_city | Hong Kong
| Sample_contact_zip/postal_code | NA
| Sample_contact_country | Hong Kong
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575347/suppl/GSM575347_Huh7-CD133-ve.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575347/suppl/GSM575347_Huh7-CD133-ve.MAS5.CHP.gz
| Sample_relation | Reanalysis of: GSM575349
| Sample_series_id | GSE23450
| Sample_data_row_count | 54675
| |
|
GSM575348 | GPL570 |
|
Huh7 CD133+, RMA
|
Huh7 CD133+
|
cell type: HCC
cell line: Huh7
|
RMA
|
Sample_geo_accession | GSM575348
| Sample_status | Public on Apr 05 2012
| Sample_submission_date | Aug 06 2010
| Sample_last_update_date | Apr 05 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | CD133+ and CD133- cells sorted from Huh7 HCC cells using flow cytometry cell sorting technique
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| Sample_label_protocol_ch1 | Ambion MessageAmp II-Biotin Enhanced (Cat #1791)
| Sample_hyb_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| Sample_hyb_protocol | According to Affymetrix protocol
| Sample_scan_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| Sample_scan_protocol | According to Affymetrix protocol
| Sample_data_processing | The data were analyzed with RMA using GCOS Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Stephanie,,Ma
| Sample_contact_email | stefma@hkucc.hku.hk
| Sample_contact_department | Pathology and Clinical Oncology
| Sample_contact_institute | University of Hong Kong
| Sample_contact_address | Rm 56, 10/F, Lab Block, Faculty of Medicine Bldg, 21 Sassoon Rd, Pok Fu Lam
| Sample_contact_city | Hong Kong
| Sample_contact_zip/postal_code | NA
| Sample_contact_country | Hong Kong
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575348/suppl/GSM575348_Huh7-CD133+ve.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575348/suppl/GSM575348_Huh7-CD133+ve.RMA.CHP.gz
| Sample_relation | Reanalyzed by: GSM575346
| Sample_series_id | GSE23450
| Sample_data_row_count | 54675
| |
|
GSM575349 | GPL570 |
|
Huh7 CD133-, RMA
|
Huh7 CD133-
|
cell type: HCC
cell line: Huh7
|
RMA
|
Sample_geo_accession | GSM575349
| Sample_status | Public on Apr 05 2012
| Sample_submission_date | Aug 06 2010
| Sample_last_update_date | Apr 05 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | CD133+ and CD133- cells sorted from Huh7 HCC cells using flow cytometry cell sorting technique
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| Sample_label_protocol_ch1 | Ambion MessageAmp II-Biotin Enhanced (Cat #1791)
| Sample_hyb_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| Sample_hyb_protocol | According to Affymetrix protocol
| Sample_scan_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| Sample_scan_protocol | According to Affymetrix protocol
| Sample_data_processing | The data were analyzed with RMA using GCOS Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Stephanie,,Ma
| Sample_contact_email | stefma@hkucc.hku.hk
| Sample_contact_department | Pathology and Clinical Oncology
| Sample_contact_institute | University of Hong Kong
| Sample_contact_address | Rm 56, 10/F, Lab Block, Faculty of Medicine Bldg, 21 Sassoon Rd, Pok Fu Lam
| Sample_contact_city | Hong Kong
| Sample_contact_zip/postal_code | NA
| Sample_contact_country | Hong Kong
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575349/suppl/GSM575349_Huh7-CD133-ve.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575349/suppl/GSM575349_Huh7-CD133-ve.RMA.CHP.gz
| Sample_relation | Reanalyzed by: GSM575347
| Sample_series_id | GSE23450
| Sample_data_row_count | 54675
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