Search results for the GEO ID: GSE23451  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM575351 | GPL570 |
|
PLC8024 CD133+, MAS5
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PLC8024 CD133+
|
cell type: HCC
cell line: PLC8024
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MAS5
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| Sample_geo_accession | GSM575351
| | Sample_status | Public on Apr 05 2012
| | Sample_submission_date | Aug 06 2010
| | Sample_last_update_date | Apr 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD133+ and CD133- cells sorted from PLC8024 HCC cells using flow cytometry cell sorting technique
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| | Sample_label_protocol_ch1 | Ambion MessageAmp II-Biotin Enhanced (Cat #1791)
| | Sample_hyb_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| | Sample_hyb_protocol | According to Affymetrix protocol
| | Sample_scan_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| | Sample_scan_protocol | According to Affymetrix protocol
| | Sample_data_processing | The data were analyzed with MAS5 using GCOS Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Stephanie,,Ma
| | Sample_contact_email | stefma@hkucc.hku.hk
| | Sample_contact_department | Pathology and Clinical Oncology
| | Sample_contact_institute | University of Hong Kong
| | Sample_contact_address | Rm 56, 10/F, Lab Block, Faculty of Medicine Bldg, 21 Sassoon Rd, Pok Fu Lam
| | Sample_contact_city | Hong Kong
| | Sample_contact_zip/postal_code | NA
| | Sample_contact_country | Hong Kong
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575351/suppl/GSM575351_PLC8024-133+ve.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575351/suppl/GSM575351_PLC8024-133+ve.MAS5.CHP.gz
| | Sample_relation | Reanalysis of: GSM575354
| | Sample_series_id | GSE23451
| | Sample_data_row_count | 54675
| | |
|
GSM575352 | GPL570 |
|
PLC8024 CD133-, MAS5
|
PLC8024 CD133-
|
cell type: HCC
cell line: PLC8024
|
MAS5
|
| Sample_geo_accession | GSM575352
| | Sample_status | Public on Apr 05 2012
| | Sample_submission_date | Aug 06 2010
| | Sample_last_update_date | Apr 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD133+ and CD133- cells sorted from PLC8024 HCC cells using flow cytometry cell sorting technique
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| | Sample_label_protocol_ch1 | Ambion MessageAmp II-Biotin Enhanced (Cat #1791)
| | Sample_hyb_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| | Sample_hyb_protocol | According to Affymetrix protocol
| | Sample_scan_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| | Sample_scan_protocol | According to Affymetrix protocol
| | Sample_data_processing | The data were analyzed with MAS5 using GCOS Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Stephanie,,Ma
| | Sample_contact_email | stefma@hkucc.hku.hk
| | Sample_contact_department | Pathology and Clinical Oncology
| | Sample_contact_institute | University of Hong Kong
| | Sample_contact_address | Rm 56, 10/F, Lab Block, Faculty of Medicine Bldg, 21 Sassoon Rd, Pok Fu Lam
| | Sample_contact_city | Hong Kong
| | Sample_contact_zip/postal_code | NA
| | Sample_contact_country | Hong Kong
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575352/suppl/GSM575352_PLC8024-133-ve.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575352/suppl/GSM575352_PLC8024-133-ve.MAS5.CHP.gz
| | Sample_relation | Reanalysis of: GSM575355
| | Sample_series_id | GSE23451
| | Sample_data_row_count | 54675
| | |
|
GSM575354 | GPL570 |
|
PLC8024 CD133+, RMA
|
PLC8024 CD133+
|
cell type: HCC
cell line: PLC8024
|
RMA
|
| Sample_geo_accession | GSM575354
| | Sample_status | Public on Apr 05 2012
| | Sample_submission_date | Aug 06 2010
| | Sample_last_update_date | Apr 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD133+ and CD133- cells sorted from PLC8024 HCC cells using flow cytometry cell sorting technique
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| | Sample_label_protocol_ch1 | Ambion MessageAmp II-Biotin Enhanced (Cat #1791)
| | Sample_hyb_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| | Sample_hyb_protocol | According to Affymetrix protocol
| | Sample_scan_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| | Sample_scan_protocol | According to Affymetrix protocol
| | Sample_data_processing | The data were analyzed with RMA using GCOS Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Stephanie,,Ma
| | Sample_contact_email | stefma@hkucc.hku.hk
| | Sample_contact_department | Pathology and Clinical Oncology
| | Sample_contact_institute | University of Hong Kong
| | Sample_contact_address | Rm 56, 10/F, Lab Block, Faculty of Medicine Bldg, 21 Sassoon Rd, Pok Fu Lam
| | Sample_contact_city | Hong Kong
| | Sample_contact_zip/postal_code | NA
| | Sample_contact_country | Hong Kong
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575354/suppl/GSM575354_PLC8024-133+ve.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575354/suppl/GSM575354_PLC8024-133+ve.RMA.CHP.gz
| | Sample_relation | Reanalyzed by: GSM575351
| | Sample_series_id | GSE23451
| | Sample_data_row_count | 54675
| | |
|
GSM575355 | GPL570 |
|
PLC8024 CD133-, RMA
|
PLC8024 CD133-
|
cell type: HCC
cell line: PLC8024
|
RMA
|
| Sample_geo_accession | GSM575355
| | Sample_status | Public on Apr 05 2012
| | Sample_submission_date | Aug 06 2010
| | Sample_last_update_date | Apr 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD133+ and CD133- cells sorted from PLC8024 HCC cells using flow cytometry cell sorting technique
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| | Sample_label_protocol_ch1 | Ambion MessageAmp II-Biotin Enhanced (Cat #1791)
| | Sample_hyb_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| | Sample_hyb_protocol | According to Affymetrix protocol
| | Sample_scan_protocol | Service by The University of Hong Kong (HKU) Genome Research Centre (protocol attached)
| | Sample_scan_protocol | According to Affymetrix protocol
| | Sample_data_processing | The data were analyzed with RMA using GCOS Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Stephanie,,Ma
| | Sample_contact_email | stefma@hkucc.hku.hk
| | Sample_contact_department | Pathology and Clinical Oncology
| | Sample_contact_institute | University of Hong Kong
| | Sample_contact_address | Rm 56, 10/F, Lab Block, Faculty of Medicine Bldg, 21 Sassoon Rd, Pok Fu Lam
| | Sample_contact_city | Hong Kong
| | Sample_contact_zip/postal_code | NA
| | Sample_contact_country | Hong Kong
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575355/suppl/GSM575355_PLC8024-133-ve.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM575nnn/GSM575355/suppl/GSM575355_PLC8024-133-ve.RMA.CHP.gz
| | Sample_relation | Reanalyzed by: GSM575352
| | Sample_series_id | GSE23451
| | Sample_data_row_count | 54675
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