Result

Search results for the GEO ID: GSE23598

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GSM ID

GPL ID

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Title

Source name

Description

Characteristics

GSM578826

GPL1261

MT wild-type mice without DOX treatment, biological rep1

MT+/+_SALINE

genotype/variation: MT+/+ tissue: heart

MT+/+ mice without DOX treatment, biological rep1

Sample_geo_accession	GSM578826
Sample_status	Public on Aug 10 2013
Sample_submission_date	Aug 12 2010
Sample_last_update_date	Aug 10 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	MT-Ⅰ/Ⅱ null (MT-/-) mice and corresponding wild-type mice (MT+/+) were administrated with a single dose of DOX (15 mg/kg, i.p.) or equal volume of saline. Animals were sacrificed on the 4th day after DOX administration and samples were collected for further analyses.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
Sample_hyb_protocol	300 μl of hybridization cocktail containing 15 μg of fragmented and biotin-labeled cRNA were loaded onto each GeneChip® Mouse Genome 430 2.0 array chip. Hybridization was allowed to proceed overnight (16 h) at 45℃, followed by washing and staining on GeneChip fluidics station 450 (Affymetrix, Santa Clara, CA) with reagents provided by Affymetrix.
Sample_scan_protocol	GeneChips were scanned using the GeneChip Scanner 3000.
Sample_data_processing	The scanned images were first assessed by visual inspection, then analyzed by GeneChip Operating Software (GCOS 1.4) supplied by Affymetrix to generate raw data files. Further processing was done using dChip software.
Sample_platform_id	GPL1261
Sample_contact_name	Yi,,Shuai
Sample_contact_email	nicoleshuai@hotmail.com
Sample_contact_department	Department of Toxicology
Sample_contact_institute	Shanghai Municipal Center for Disease Control & Prevention
Sample_contact_address	1380, Zhongshan (W.)
Sample_contact_city	Shanghai
Sample_contact_zip/postal_code	200336
Sample_contact_country	China
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM578nnn/GSM578826/suppl/GSM578826.CEL.gz
Sample_series_id	GSE23598
Sample_data_row_count	45101

GSM578827

GPL1261

MT wild-type mice without DOX treatment, biological rep2

MT+/+_SALINE

genotype/variation: MT+/+ tissue: heart

MT+/+ mice without DOX treatment, biological rep2

Sample_geo_accession	GSM578827
Sample_status	Public on Aug 10 2013
Sample_submission_date	Aug 12 2010
Sample_last_update_date	Aug 10 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	MT-Ⅰ/Ⅱ null (MT-/-) mice and corresponding wild-type mice (MT+/+) were administrated with a single dose of DOX (15 mg/kg, i.p.) or equal volume of saline. Animals were sacrificed on the 4th day after DOX administration and samples were collected for further analyses.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
Sample_hyb_protocol	300 μl of hybridization cocktail containing 15 μg of fragmented and biotin-labeled cRNA were loaded onto each GeneChip® Mouse Genome 430 2.0 array chip. Hybridization was allowed to proceed overnight (16 h) at 45℃, followed by washing and staining on GeneChip fluidics station 450 (Affymetrix, Santa Clara, CA) with reagents provided by Affymetrix.
Sample_scan_protocol	GeneChips were scanned using the GeneChip Scanner 3000.
Sample_data_processing	The scanned images were first assessed by visual inspection, then analyzed by GeneChip Operating Software (GCOS 1.4) supplied by Affymetrix to generate raw data files. Further processing was done using dChip software.
Sample_platform_id	GPL1261
Sample_contact_name	Yi,,Shuai
Sample_contact_email	nicoleshuai@hotmail.com
Sample_contact_department	Department of Toxicology
Sample_contact_institute	Shanghai Municipal Center for Disease Control & Prevention
Sample_contact_address	1380, Zhongshan (W.)
Sample_contact_city	Shanghai
Sample_contact_zip/postal_code	200336
Sample_contact_country	China
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM578nnn/GSM578827/suppl/GSM578827.CEL.gz
Sample_series_id	GSE23598
Sample_data_row_count	45101

GSM578828

GPL1261

MT wild-type mice with DOX treatment, biological rep1

MT+/+_DOX

genotype/variation: MT+/+ tissue: heart

MT+/+ mice with DOX treatment, biological rep1

Sample_geo_accession	GSM578828
Sample_status	Public on Aug 10 2013
Sample_submission_date	Aug 12 2010
Sample_last_update_date	Aug 10 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	MT-Ⅰ/Ⅱ null (MT-/-) mice and corresponding wild-type mice (MT+/+) were administrated with a single dose of DOX (15 mg/kg, i.p.) or equal volume of saline. Animals were sacrificed on the 4th day after DOX administration and samples were collected for further analyses.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
Sample_hyb_protocol	300 μl of hybridization cocktail containing 15 μg of fragmented and biotin-labeled cRNA were loaded onto each GeneChip® Mouse Genome 430 2.0 array chip. Hybridization was allowed to proceed overnight (16 h) at 45℃, followed by washing and staining on GeneChip fluidics station 450 (Affymetrix, Santa Clara, CA) with reagents provided by Affymetrix.
Sample_scan_protocol	GeneChips were scanned using the GeneChip Scanner 3000.
Sample_data_processing	The scanned images were first assessed by visual inspection, then analyzed by GeneChip Operating Software (GCOS 1.4) supplied by Affymetrix to generate raw data files. Further processing was done using dChip software.
Sample_platform_id	GPL1261
Sample_contact_name	Yi,,Shuai
Sample_contact_email	nicoleshuai@hotmail.com
Sample_contact_department	Department of Toxicology
Sample_contact_institute	Shanghai Municipal Center for Disease Control & Prevention
Sample_contact_address	1380, Zhongshan (W.)
Sample_contact_city	Shanghai
Sample_contact_zip/postal_code	200336
Sample_contact_country	China
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM578nnn/GSM578828/suppl/GSM578828.CEL.gz
Sample_series_id	GSE23598
Sample_data_row_count	45101

GSM578829

GPL1261

MT wild-type mice with DOX treatment, biological rep2

MT+/+_DOX

genotype/variation: MT+/+ tissue: heart

MT+/+ mice with DOX treatment, biological rep2

Sample_geo_accession	GSM578829
Sample_status	Public on Aug 10 2013
Sample_submission_date	Aug 12 2010
Sample_last_update_date	Aug 10 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	MT-Ⅰ/Ⅱ null (MT-/-) mice and corresponding wild-type mice (MT+/+) were administrated with a single dose of DOX (15 mg/kg, i.p.) or equal volume of saline. Animals were sacrificed on the 4th day after DOX administration and samples were collected for further analyses.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
Sample_hyb_protocol	300 μl of hybridization cocktail containing 15 μg of fragmented and biotin-labeled cRNA were loaded onto each GeneChip® Mouse Genome 430 2.0 array chip. Hybridization was allowed to proceed overnight (16 h) at 45℃, followed by washing and staining on GeneChip fluidics station 450 (Affymetrix, Santa Clara, CA) with reagents provided by Affymetrix.
Sample_scan_protocol	GeneChips were scanned using the GeneChip Scanner 3000.
Sample_data_processing	The scanned images were first assessed by visual inspection, then analyzed by GeneChip Operating Software (GCOS 1.4) supplied by Affymetrix to generate raw data files. Further processing was done using dChip software.
Sample_platform_id	GPL1261
Sample_contact_name	Yi,,Shuai
Sample_contact_email	nicoleshuai@hotmail.com
Sample_contact_department	Department of Toxicology
Sample_contact_institute	Shanghai Municipal Center for Disease Control & Prevention
Sample_contact_address	1380, Zhongshan (W.)
Sample_contact_city	Shanghai
Sample_contact_zip/postal_code	200336
Sample_contact_country	China
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM578nnn/GSM578829/suppl/GSM578829.CEL.gz
Sample_series_id	GSE23598
Sample_data_row_count	45101

GSM578830

GPL1261

MT knock-out mice without DOX treatment, biological rep1

MT-/-_SALINE

genotype/variation: MT-/- tissue: heart

MT-/- mice without DOX treatment, biological rep1

Sample_geo_accession	GSM578830
Sample_status	Public on Aug 10 2013
Sample_submission_date	Aug 12 2010
Sample_last_update_date	Aug 10 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	MT-Ⅰ/Ⅱ null (MT-/-) mice and corresponding wild-type mice (MT+/+) were administrated with a single dose of DOX (15 mg/kg, i.p.) or equal volume of saline. Animals were sacrificed on the 4th day after DOX administration and samples were collected for further analyses.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
Sample_hyb_protocol	300 μl of hybridization cocktail containing 15 μg of fragmented and biotin-labeled cRNA were loaded onto each GeneChip® Mouse Genome 430 2.0 array chip. Hybridization was allowed to proceed overnight (16 h) at 45℃, followed by washing and staining on GeneChip fluidics station 450 (Affymetrix, Santa Clara, CA) with reagents provided by Affymetrix.
Sample_scan_protocol	GeneChips were scanned using the GeneChip Scanner 3000.
Sample_data_processing	The scanned images were first assessed by visual inspection, then analyzed by GeneChip Operating Software (GCOS 1.4) supplied by Affymetrix to generate raw data files. Further processing was done using dChip software.
Sample_platform_id	GPL1261
Sample_contact_name	Yi,,Shuai
Sample_contact_email	nicoleshuai@hotmail.com
Sample_contact_department	Department of Toxicology
Sample_contact_institute	Shanghai Municipal Center for Disease Control & Prevention
Sample_contact_address	1380, Zhongshan (W.)
Sample_contact_city	Shanghai
Sample_contact_zip/postal_code	200336
Sample_contact_country	China
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM578nnn/GSM578830/suppl/GSM578830.CEL.gz
Sample_series_id	GSE23598
Sample_data_row_count	45101

GSM578831

GPL1261

MT knock-out mice without DOX treatment, biological rep2

MT-/-_SALINE

genotype/variation: MT-/- tissue: heart

MT-/- mice without DOX treatment, biological rep2

Sample_geo_accession	GSM578831
Sample_status	Public on Aug 10 2013
Sample_submission_date	Aug 12 2010
Sample_last_update_date	Aug 10 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	MT-Ⅰ/Ⅱ null (MT-/-) mice and corresponding wild-type mice (MT+/+) were administrated with a single dose of DOX (15 mg/kg, i.p.) or equal volume of saline. Animals were sacrificed on the 4th day after DOX administration and samples were collected for further analyses.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
Sample_hyb_protocol	300 μl of hybridization cocktail containing 15 μg of fragmented and biotin-labeled cRNA were loaded onto each GeneChip® Mouse Genome 430 2.0 array chip. Hybridization was allowed to proceed overnight (16 h) at 45℃, followed by washing and staining on GeneChip fluidics station 450 (Affymetrix, Santa Clara, CA) with reagents provided by Affymetrix.
Sample_scan_protocol	GeneChips were scanned using the GeneChip Scanner 3000.
Sample_data_processing	The scanned images were first assessed by visual inspection, then analyzed by GeneChip Operating Software (GCOS 1.4) supplied by Affymetrix to generate raw data files. Further processing was done using dChip software.
Sample_platform_id	GPL1261
Sample_contact_name	Yi,,Shuai
Sample_contact_email	nicoleshuai@hotmail.com
Sample_contact_department	Department of Toxicology
Sample_contact_institute	Shanghai Municipal Center for Disease Control & Prevention
Sample_contact_address	1380, Zhongshan (W.)
Sample_contact_city	Shanghai
Sample_contact_zip/postal_code	200336
Sample_contact_country	China
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM578nnn/GSM578831/suppl/GSM578831.CEL.gz
Sample_series_id	GSE23598
Sample_data_row_count	45101

GSM578832

GPL1261

MT knock-out mice with DOX treatment, biological rep1

MT-/-_DOX

genotype/variation: MT-/- tissue: heart

MT-/- mice with DOX treatment, biological rep1

Sample_geo_accession	GSM578832
Sample_status	Public on Aug 10 2013
Sample_submission_date	Aug 12 2010
Sample_last_update_date	Aug 10 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	MT-Ⅰ/Ⅱ null (MT-/-) mice and corresponding wild-type mice (MT+/+) were administrated with a single dose of DOX (15 mg/kg, i.p.) or equal volume of saline. Animals were sacrificed on the 4th day after DOX administration and samples were collected for further analyses.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
Sample_hyb_protocol	300 μl of hybridization cocktail containing 15 μg of fragmented and biotin-labeled cRNA were loaded onto each GeneChip® Mouse Genome 430 2.0 array chip. Hybridization was allowed to proceed overnight (16 h) at 45℃, followed by washing and staining on GeneChip fluidics station 450 (Affymetrix, Santa Clara, CA) with reagents provided by Affymetrix.
Sample_scan_protocol	GeneChips were scanned using the GeneChip Scanner 3000.
Sample_data_processing	The scanned images were first assessed by visual inspection, then analyzed by GeneChip Operating Software (GCOS 1.4) supplied by Affymetrix to generate raw data files. Further processing was done using dChip software.
Sample_platform_id	GPL1261
Sample_contact_name	Yi,,Shuai
Sample_contact_email	nicoleshuai@hotmail.com
Sample_contact_department	Department of Toxicology
Sample_contact_institute	Shanghai Municipal Center for Disease Control & Prevention
Sample_contact_address	1380, Zhongshan (W.)
Sample_contact_city	Shanghai
Sample_contact_zip/postal_code	200336
Sample_contact_country	China
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM578nnn/GSM578832/suppl/GSM578832.CEL.gz
Sample_series_id	GSE23598
Sample_data_row_count	45101

GSM578833

GPL1261

MT knock-out mice with DOX treatment, biological rep2

MT-/-_DOX

genotype/variation: MT-/- tissue: heart

MT-/- mice with DOX treatment, biological rep2

Sample_geo_accession	GSM578833
Sample_status	Public on Aug 10 2013
Sample_submission_date	Aug 12 2010
Sample_last_update_date	Aug 10 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	MT-Ⅰ/Ⅱ null (MT-/-) mice and corresponding wild-type mice (MT+/+) were administrated with a single dose of DOX (15 mg/kg, i.p.) or equal volume of saline. Animals were sacrificed on the 4th day after DOX administration and samples were collected for further analyses.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
Sample_hyb_protocol	300 μl of hybridization cocktail containing 15 μg of fragmented and biotin-labeled cRNA were loaded onto each GeneChip® Mouse Genome 430 2.0 array chip. Hybridization was allowed to proceed overnight (16 h) at 45℃, followed by washing and staining on GeneChip fluidics station 450 (Affymetrix, Santa Clara, CA) with reagents provided by Affymetrix.
Sample_scan_protocol	GeneChips were scanned using the GeneChip Scanner 3000.
Sample_data_processing	The scanned images were first assessed by visual inspection, then analyzed by GeneChip Operating Software (GCOS 1.4) supplied by Affymetrix to generate raw data files. Further processing was done using dChip software.
Sample_platform_id	GPL1261
Sample_contact_name	Yi,,Shuai
Sample_contact_email	nicoleshuai@hotmail.com
Sample_contact_department	Department of Toxicology
Sample_contact_institute	Shanghai Municipal Center for Disease Control & Prevention
Sample_contact_address	1380, Zhongshan (W.)
Sample_contact_city	Shanghai
Sample_contact_zip/postal_code	200336
Sample_contact_country	China
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM578nnn/GSM578833/suppl/GSM578833.CEL.gz
Sample_series_id	GSE23598
Sample_data_row_count	45101

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