Search results for the GEO ID: GSE23627  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM579204 | GPL570 |
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RCC parental cell line (non-metastatic), biological rep1
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Cell line
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cell line: SN12C
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Expression data from RCC cell lines to study metastasis progression
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| Sample_geo_accession | GSM579204
| | Sample_status | Public on Aug 15 2010
| | Sample_submission_date | Aug 13 2010
| | Sample_last_update_date | Aug 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM579nnn/GSM579204/suppl/GSM579204_ML_U133Plus2_SN12C-1.CEL.gz
| | Sample_series_id | GSE23627
| | Sample_series_id | GSE23631
| | Sample_data_row_count | 54675
| | |
|
GSM579205 | GPL570 |
|
RCC parental cell line (non-metastatic), biological rep2
|
Cell line
|
cell line: SN12C
|
Expression data from RCC cell lines to study metastasis progression
|
| Sample_geo_accession | GSM579205
| | Sample_status | Public on Aug 15 2010
| | Sample_submission_date | Aug 13 2010
| | Sample_last_update_date | Aug 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM579nnn/GSM579205/suppl/GSM579205_ML_U133Plus_2_SN12C-2.CEL.gz
| | Sample_series_id | GSE23627
| | Sample_series_id | GSE23631
| | Sample_data_row_count | 54675
| | |
|
GSM579206 | GPL570 |
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RCC Lung metastatic Genration 1
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Cell line
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cell line: LM1
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Expression data from RCC cell lines to study metastasis progression
|
| Sample_geo_accession | GSM579206
| | Sample_status | Public on Aug 15 2010
| | Sample_submission_date | Aug 13 2010
| | Sample_last_update_date | Aug 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM579nnn/GSM579206/suppl/GSM579206_ML_U133Plus_2_LM1.CEL.gz
| | Sample_series_id | GSE23627
| | Sample_series_id | GSE23631
| | Sample_data_row_count | 54675
| | |
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GSM579207 | GPL570 |
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RCC Lung metastatic Genration 2, biological rep 1
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Cell line
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cell line: LM2
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Expression data from RCC cell lines to study metastasis progression
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| Sample_geo_accession | GSM579207
| | Sample_status | Public on Aug 15 2010
| | Sample_submission_date | Aug 13 2010
| | Sample_last_update_date | Aug 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM579nnn/GSM579207/suppl/GSM579207_ML_U133Plus_2_LM2-1.CEL.gz
| | Sample_series_id | GSE23627
| | Sample_series_id | GSE23631
| | Sample_data_row_count | 54675
| | |
|
GSM579208 | GPL570 |
|
RCC Lung metastatic Genration 2, biological rep 2
|
Cell line
|
cell line: LM2
|
Expression data from RCC cell lines to study metastasis progression
|
| Sample_geo_accession | GSM579208
| | Sample_status | Public on Aug 15 2010
| | Sample_submission_date | Aug 13 2010
| | Sample_last_update_date | Aug 13 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed using Qiagen miRNeasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | The data were analyzed with Partek Genomic Suite 6.5 using default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Venkata,J,Thodima
| | Sample_contact_email | tvjagan@gmail.com
| | Sample_contact_phone | 2126393595
| | Sample_contact_fax | 2127173541
| | Sample_contact_laboratory | Chaganti
| | Sample_contact_department | Cell Biology
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 430 E 67th St RRL#337
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM579nnn/GSM579208/suppl/GSM579208_ML_U133Plus_2_LM2-2.CEL.gz
| | Sample_series_id | GSE23627
| | Sample_series_id | GSE23631
| | Sample_data_row_count | 54675
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