Search results for the GEO ID: GSE23641  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM579979 | GPL1261 |
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wild type dendritic cells + LPS
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dendritic cells, wildtype C57Bl/6 mice
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strain: C57BL/6J
cell type: dendritic cells (differentiated from bone marrow using GMCSF)
protocol: control
stress: LPS challenge
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WT LPS
gene expression from wild type bone marrow derived dendritic cells incubated in lipopolysaccharide
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| Sample_geo_accession | GSM579979
| | Sample_status | Public on Aug 16 2010
| | Sample_submission_date | Aug 16 2010
| | Sample_last_update_date | Aug 16 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After 7 days of incubation, media was replaced with complete RPMI media containing 10ng/ml of lipopolysaccharide.
| | Sample_growth_protocol_ch1 | Bone marrow derived macrophages were incubated in a 37 degree sterile incubator in complete RPMI media containing 20ng/ml of recombinant murine GM-CSF.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix hyb protocol.
| | Sample_scan_protocol | Standard Affymetrix scan protocol.
| | Sample_data_processing | Standard Affymetrix data analysis protocol.
| | Sample_data_processing | Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aadel,,Chaudhuri
| | Sample_contact_institute | Caltech
| | Sample_contact_address | 1200 E California Blvd
| | Sample_contact_city | Pasadena
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM579nnn/GSM579979/suppl/GSM579979.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM579nnn/GSM579979/suppl/GSM579979.CHP.gz
| | Sample_series_id | GSE23641
| | Sample_data_row_count | 45101
| | |
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GSM579980 | GPL1261 |
|
miR155-/- dendritic cells + LPS
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dendritic cells, miR-155-/- C57Bl/6 mice
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strain: C57BL/6J
cell type: dendritic cells (differentiated from bone marrow using GMCSF)
protocol: miR155 knockout
stress: LPS challenge
|
KO LPS
gene expression from miR-155-/- bone marrow derived dendritic cells incubated in lipopolysaccharide
|
| Sample_geo_accession | GSM579980
| | Sample_status | Public on Aug 16 2010
| | Sample_submission_date | Aug 16 2010
| | Sample_last_update_date | Aug 16 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After 7 days of incubation, media was replaced with complete RPMI media containing 10ng/ml of lipopolysaccharide.
| | Sample_growth_protocol_ch1 | Bone marrow derived macrophages were incubated in a 37 degree sterile incubator in complete RPMI media containing 20ng/ml of recombinant murine GM-CSF.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix hyb protocol.
| | Sample_scan_protocol | Standard Affymetrix scan protocol.
| | Sample_data_processing | Standard Affymetrix data analysis protocol.
| | Sample_data_processing | Algorithm: ExpressionStat 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aadel,,Chaudhuri
| | Sample_contact_institute | Caltech
| | Sample_contact_address | 1200 E California Blvd
| | Sample_contact_city | Pasadena
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM579nnn/GSM579980/suppl/GSM579980.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM579nnn/GSM579980/suppl/GSM579980.CHP.gz
| | Sample_series_id | GSE23641
| | Sample_data_row_count | 45101
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