Result

Search results for the GEO ID: GSE23643

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GSM ID

GPL ID

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Title

Source name

Description

Characteristics

GSM579999

GPL1355

Dahl S Rat_1

Dahl S Rat fed with Low-salt (0.3%) diet

tissue: Dahl S Rat Heart genotype: Dahl salt sensitive rat age: 53 days old Dahl S Rat

Dahl S Rat_1

Sample_geo_accession	GSM579999
Sample_status	Public on Jan 20 2011
Sample_submission_date	Aug 16 2010
Sample_last_update_date	Jan 20 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Rattus norvegicus
Sample_taxid_ch1	10116
Sample_treatment_protocol_ch1	After weaning all rats were fed with Low-salt (0.3%) diet (Harlan Teklad diet TD 7034; Harlan–Sprague-Dawley).
Sample_growth_protocol_ch1	All rats born on the same day were selected and weaned at 30 days of age.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Rat Genome 230 2.0 Array.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Sample_data_processing	We have used R statistical program with the affylmGUI (Affymetrix .CEL files) to do the evaluation of data set. The data was normalized using Robust Multiarray Averaging (RMA). After normalization, Linear Model Fit was completed. Contrast parameters - Experiment versus control were used to create the 'Table of Genes Ranked in order of Differential Expression'. The p values were adjusted using the Benjamini-Hochberg method (BH).
Sample_platform_id	GPL1355
Sample_contact_name	Bina,,Joe
Sample_contact_email	bina.joe@utoledo.edu
Sample_contact_phone	419-383-4415
Sample_contact_fax	419-383-2871
Sample_contact_laboratory	Physiological Genomics Laboratory
Sample_contact_department	Physiology and Pharmacology
Sample_contact_institute	University of toledo
Sample_contact_address	3000 Arlington avenue
Sample_contact_city	Toledo
Sample_contact_state	OH
Sample_contact_zip/postal_code	43614
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM579nnn/GSM579999/suppl/GSM579999.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM579nnn/GSM579999/suppl/GSM579999.CHP.gz
Sample_series_id	GSE23643
Sample_data_row_count	31099

GSM580000

GPL1355

Dahl S Rat_2

Dahl S Rat fed with Low-salt (0.3%) diet

tissue: Dahl S Rat Heart genotype: Dahl salt sensitive rat age: 53 days old Dahl S Rat

Dahl S Rat_2

Sample_geo_accession	GSM580000
Sample_status	Public on Jan 20 2011
Sample_submission_date	Aug 16 2010
Sample_last_update_date	Jan 20 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Rattus norvegicus
Sample_taxid_ch1	10116
Sample_treatment_protocol_ch1	After weaning all rats were fed with Low-salt (0.3%) diet (Harlan Teklad diet TD 7034; Harlan–Sprague-Dawley).
Sample_growth_protocol_ch1	All rats born on the same day were selected and weaned at 30 days of age.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Rat Genome 230 2.0 Array.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Sample_data_processing	We have used R statistical program with the affylmGUI (Affymetrix .CEL files) to do the evaluation of data set. The data was normalized using Robust Multiarray Averaging (RMA). After normalization, Linear Model Fit was completed. Contrast parameters - Experiment versus control were used to create the 'Table of Genes Ranked in order of Differential Expression'. The p values were adjusted using the Benjamini-Hochberg method (BH).
Sample_platform_id	GPL1355
Sample_contact_name	Bina,,Joe
Sample_contact_email	bina.joe@utoledo.edu
Sample_contact_phone	419-383-4415
Sample_contact_fax	419-383-2871
Sample_contact_laboratory	Physiological Genomics Laboratory
Sample_contact_department	Physiology and Pharmacology
Sample_contact_institute	University of toledo
Sample_contact_address	3000 Arlington avenue
Sample_contact_city	Toledo
Sample_contact_state	OH
Sample_contact_zip/postal_code	43614
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM580nnn/GSM580000/suppl/GSM580000.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM580nnn/GSM580000/suppl/GSM580000.CHP.gz
Sample_series_id	GSE23643
Sample_data_row_count	31099

GSM580001

GPL1355

Dahl S Rat_3

Dahl S Rat fed with Low-salt (0.3%) diet

tissue: Dahl S Rat Heart genotype: Dahl salt sensitive rat age: 53 days old Dahl S Rat

Dahl S Rat_3

Sample_geo_accession	GSM580001
Sample_status	Public on Jan 20 2011
Sample_submission_date	Aug 16 2010
Sample_last_update_date	Jan 20 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Rattus norvegicus
Sample_taxid_ch1	10116
Sample_treatment_protocol_ch1	After weaning all rats were fed with Low-salt (0.3%) diet (Harlan Teklad diet TD 7034; Harlan–Sprague-Dawley).
Sample_growth_protocol_ch1	All rats born on the same day were selected and weaned at 30 days of age.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Rat Genome 230 2.0 Array.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Sample_data_processing	We have used R statistical program with the affylmGUI (Affymetrix .CEL files) to do the evaluation of data set. The data was normalized using Robust Multiarray Averaging (RMA). After normalization, Linear Model Fit was completed. Contrast parameters - Experiment versus control were used to create the 'Table of Genes Ranked in order of Differential Expression'. The p values were adjusted using the Benjamini-Hochberg method (BH).
Sample_platform_id	GPL1355
Sample_contact_name	Bina,,Joe
Sample_contact_email	bina.joe@utoledo.edu
Sample_contact_phone	419-383-4415
Sample_contact_fax	419-383-2871
Sample_contact_laboratory	Physiological Genomics Laboratory
Sample_contact_department	Physiology and Pharmacology
Sample_contact_institute	University of toledo
Sample_contact_address	3000 Arlington avenue
Sample_contact_city	Toledo
Sample_contact_state	OH
Sample_contact_zip/postal_code	43614
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM580nnn/GSM580001/suppl/GSM580001.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM580nnn/GSM580001/suppl/GSM580001.CHP.gz
Sample_series_id	GSE23643
Sample_data_row_count	31099

GSM580002

GPL1355

S.LEW(10)x12x2x3x5 _1

S.LEW(10)x12x2x3x5 Congenic Rat fed with Low-salt (0.3%) diet

tissue: S.LEW(10)x12x2x3x5 Congenic Rat Heart genotype: Congenic rat with Dahl S background age: 53 days old S.LEW(10)x12x2x3x5 Congenic Rat

S.LEW(10)x12x2x3x5 _1

Sample_geo_accession	GSM580002
Sample_status	Public on Jan 20 2011
Sample_submission_date	Aug 16 2010
Sample_last_update_date	Jan 20 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Rattus norvegicus
Sample_taxid_ch1	10116
Sample_treatment_protocol_ch1	After weaning all rats were fed with Low-salt (0.3%) diet (Harlan Teklad diet TD 7034; Harlan–Sprague-Dawley).
Sample_growth_protocol_ch1	All rats born on the same day were selected and weaned at 30 days of age.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Rat Genome 230 2.0 Array.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Sample_data_processing	We have used R statistical program with the affylmGUI (Affymetrix .CEL files) to do the evaluation of data set. The data was normalized using Robust Multiarray Averaging (RMA). After normalization, Linear Model Fit was completed. Contrast parameters - Experiment versus control were used to create the 'Table of Genes Ranked in order of Differential Expression'. The p values were adjusted using the Benjamini-Hochberg method (BH).
Sample_platform_id	GPL1355
Sample_contact_name	Bina,,Joe
Sample_contact_email	bina.joe@utoledo.edu
Sample_contact_phone	419-383-4415
Sample_contact_fax	419-383-2871
Sample_contact_laboratory	Physiological Genomics Laboratory
Sample_contact_department	Physiology and Pharmacology
Sample_contact_institute	University of toledo
Sample_contact_address	3000 Arlington avenue
Sample_contact_city	Toledo
Sample_contact_state	OH
Sample_contact_zip/postal_code	43614
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM580nnn/GSM580002/suppl/GSM580002.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM580nnn/GSM580002/suppl/GSM580002.CHP.gz
Sample_series_id	GSE23643
Sample_data_row_count	31099

GSM580003

GPL1355

S.LEW(10)x12x2x3x5 _2

S.LEW(10)x12x2x3x5 Congenic Rat fed with Low-salt (0.3%) diet

tissue: S.LEW(10)x12x2x3x5 Congenic Rat Heart genotype: Congenic rat with Dahl S background age: 53 days old S.LEW(10)x12x2x3x5 Congenic Rat

S.LEW(10)x12x2x3x5 _2

Sample_geo_accession	GSM580003
Sample_status	Public on Jan 20 2011
Sample_submission_date	Aug 16 2010
Sample_last_update_date	Jan 20 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Rattus norvegicus
Sample_taxid_ch1	10116
Sample_treatment_protocol_ch1	After weaning all rats were fed with Low-salt (0.3%) diet (Harlan Teklad diet TD 7034; Harlan–Sprague-Dawley).
Sample_growth_protocol_ch1	All rats born on the same day were selected and weaned at 30 days of age.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Rat Genome 230 2.0 Array.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Sample_data_processing	We have used R statistical program with the affylmGUI (Affymetrix .CEL files) to do the evaluation of data set. The data was normalized using Robust Multiarray Averaging (RMA). After normalization, Linear Model Fit was completed. Contrast parameters - Experiment versus control were used to create the 'Table of Genes Ranked in order of Differential Expression'. The p values were adjusted using the Benjamini-Hochberg method (BH).
Sample_platform_id	GPL1355
Sample_contact_name	Bina,,Joe
Sample_contact_email	bina.joe@utoledo.edu
Sample_contact_phone	419-383-4415
Sample_contact_fax	419-383-2871
Sample_contact_laboratory	Physiological Genomics Laboratory
Sample_contact_department	Physiology and Pharmacology
Sample_contact_institute	University of toledo
Sample_contact_address	3000 Arlington avenue
Sample_contact_city	Toledo
Sample_contact_state	OH
Sample_contact_zip/postal_code	43614
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM580nnn/GSM580003/suppl/GSM580003.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM580nnn/GSM580003/suppl/GSM580003.CHP.gz
Sample_series_id	GSE23643
Sample_data_row_count	31099

GSM580004

GPL1355

S.LEW(10)x12x2x3x5 _3

S.LEW(10)x12x2x3x5 Congenic Rat fed with Low-salt (0.3%) diet

tissue: S.LEW(10)x12x2x3x5 Congenic Rat Heart genotype: Congenic rat with Dahl S background age: 53 days old S.LEW(10)x12x2x3x5 Congenic Rat

S.LEW(10)x12x2x3x5 _3

Sample_geo_accession	GSM580004
Sample_status	Public on Jan 20 2011
Sample_submission_date	Aug 16 2010
Sample_last_update_date	Jan 20 2011
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Rattus norvegicus
Sample_taxid_ch1	10116
Sample_treatment_protocol_ch1	After weaning all rats were fed with Low-salt (0.3%) diet (Harlan Teklad diet TD 7034; Harlan–Sprague-Dawley).
Sample_growth_protocol_ch1	All rats born on the same day were selected and weaned at 30 days of age.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Sample_hyb_protocol	Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Rat Genome 230 2.0 Array.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Sample_data_processing	We have used R statistical program with the affylmGUI (Affymetrix .CEL files) to do the evaluation of data set. The data was normalized using Robust Multiarray Averaging (RMA). After normalization, Linear Model Fit was completed. Contrast parameters - Experiment versus control were used to create the 'Table of Genes Ranked in order of Differential Expression'. The p values were adjusted using the Benjamini-Hochberg method (BH).
Sample_platform_id	GPL1355
Sample_contact_name	Bina,,Joe
Sample_contact_email	bina.joe@utoledo.edu
Sample_contact_phone	419-383-4415
Sample_contact_fax	419-383-2871
Sample_contact_laboratory	Physiological Genomics Laboratory
Sample_contact_department	Physiology and Pharmacology
Sample_contact_institute	University of toledo
Sample_contact_address	3000 Arlington avenue
Sample_contact_city	Toledo
Sample_contact_state	OH
Sample_contact_zip/postal_code	43614
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM580nnn/GSM580004/suppl/GSM580004.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM580nnn/GSM580004/suppl/GSM580004.CHP.gz
Sample_series_id	GSE23643
Sample_data_row_count	31099

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