Search results for the GEO ID: GSE23781  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM586842 | GPL1261 |
|
Fz4 KO 1
|
E13.5 Fz4-/- embryonic kidneys from litter 1
|
sample type: E13.5 whole kidney Fz4-/-
age: E13.5
tissue: kidney
genotype: Fz4-/-
|
Gene expression data from whole kidneys at E13.5
|
| Sample_geo_accession | GSM586842
| | Sample_status | Public on Mar 23 2011
| | Sample_submission_date | Aug 24 2010
| | Sample_last_update_date | Mar 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and RNeasy according to manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| | Sample_hyb_protocol | Hybridization performed by Johns Hopkins Microarray Core Facility with their standard protocol. Samples were hybridized to Affymetrix MOE430.2 array
| | Sample_scan_protocol | Scanning were performed by Johns Hopkins Microarray Core Facility with their standard protocol
| | Sample_data_processing | Raw data was processed in R2.9.1 using the affy and rma packages from the Bioconductor Project (www.bioconductor.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Xin,,Ye
| | Sample_contact_institute | Johns Hopkins School of Medicine
| | Sample_contact_address | 725 N Wolfe Street, PCTB 805
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21205
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM586nnn/GSM586842/suppl/GSM586842_Fz4_KO_1.CEL.gz
| | Sample_series_id | GSE23781
| | Sample_data_row_count | 45101
| | |
|
GSM586843 | GPL1261 |
|
Fz4 KO 2
|
E13.5 Fz4-/- embryonic kidneys from litter 2
|
sample type: E13.5 whole kidney Fz4-/-
age: E13.5
tissue: kidney
genotype: Fz4-/-
|
Gene expression data from whole kidneys at E13.5
|
| Sample_geo_accession | GSM586843
| | Sample_status | Public on Mar 23 2011
| | Sample_submission_date | Aug 24 2010
| | Sample_last_update_date | Mar 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and RNeasy according to manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| | Sample_hyb_protocol | Hybridization performed by Johns Hopkins Microarray Core Facility with their standard protocol. Samples were hybridized to Affymetrix MOE430.2 array
| | Sample_scan_protocol | Scanning were performed by Johns Hopkins Microarray Core Facility with their standard protocol
| | Sample_data_processing | Raw data was processed in R2.9.1 using the affy and rma packages from the Bioconductor Project (www.bioconductor.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Xin,,Ye
| | Sample_contact_institute | Johns Hopkins School of Medicine
| | Sample_contact_address | 725 N Wolfe Street, PCTB 805
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21205
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM586nnn/GSM586843/suppl/GSM586843_Fz4_KO_2.CEL.gz
| | Sample_series_id | GSE23781
| | Sample_data_row_count | 45101
| | |
|
GSM586844 | GPL1261 |
|
Fz4 KO 3
|
E13.5 Fz4-/- embryonic kidneys from litter 3
|
sample type: E13.5 whole kidney Fz4-/-
age: E13.5
tissue: kidney
genotype: Fz4-/-
|
Gene expression data from whole kidneys at E13.5
|
| Sample_geo_accession | GSM586844
| | Sample_status | Public on Mar 23 2011
| | Sample_submission_date | Aug 24 2010
| | Sample_last_update_date | Mar 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and RNeasy according to manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| | Sample_hyb_protocol | Hybridization performed by Johns Hopkins Microarray Core Facility with their standard protocol. Samples were hybridized to Affymetrix MOE430.2 array
| | Sample_scan_protocol | Scanning were performed by Johns Hopkins Microarray Core Facility with their standard protocol
| | Sample_data_processing | Raw data was processed in R2.9.1 using the affy and rma packages from the Bioconductor Project (www.bioconductor.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Xin,,Ye
| | Sample_contact_institute | Johns Hopkins School of Medicine
| | Sample_contact_address | 725 N Wolfe Street, PCTB 805
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21205
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM586nnn/GSM586844/suppl/GSM586844_Fz4_KO_3.CEL.gz
| | Sample_series_id | GSE23781
| | Sample_data_row_count | 45101
| | |
|
GSM586845 | GPL1261 |
|
Fz4 WT 1
|
E13.5 Fz4+/+ embryonic kidneys from litter 1
|
sample type: E13.5 whole kidney Fz4+/+
age: E13.5
tissue: kidney
genotype: Fz4+/+
|
Gene expression data from whole kidneys at E13.5
|
| Sample_geo_accession | GSM586845
| | Sample_status | Public on Mar 23 2011
| | Sample_submission_date | Aug 24 2010
| | Sample_last_update_date | Mar 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and RNeasy according to manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| | Sample_hyb_protocol | Hybridization performed by Johns Hopkins Microarray Core Facility with their standard protocol. Samples were hybridized to Affymetrix MOE430.2 array
| | Sample_scan_protocol | Scanning were performed by Johns Hopkins Microarray Core Facility with their standard protocol
| | Sample_data_processing | Raw data was processed in R2.9.1 using the affy and rma packages from the Bioconductor Project (www.bioconductor.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Xin,,Ye
| | Sample_contact_institute | Johns Hopkins School of Medicine
| | Sample_contact_address | 725 N Wolfe Street, PCTB 805
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21205
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM586nnn/GSM586845/suppl/GSM586845_Fz4_WT_1.CEL.gz
| | Sample_series_id | GSE23781
| | Sample_data_row_count | 45101
| | |
|
GSM586846 | GPL1261 |
|
Fz4 WT 2
|
E13.5 Fz4+/+ embryonic kidneys from litter 2
|
sample type: E13.5 whole kidney Fz4+/+
age: E13.5
tissue: kidney
genotype: Fz4+/+
|
Gene expression data from whole kidneys at E13.5
|
| Sample_geo_accession | GSM586846
| | Sample_status | Public on Mar 23 2011
| | Sample_submission_date | Aug 24 2010
| | Sample_last_update_date | Mar 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and RNeasy according to manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| | Sample_hyb_protocol | Hybridization performed by Johns Hopkins Microarray Core Facility with their standard protocol. Samples were hybridized to Affymetrix MOE430.2 array
| | Sample_scan_protocol | Scanning were performed by Johns Hopkins Microarray Core Facility with their standard protocol
| | Sample_data_processing | Raw data was processed in R2.9.1 using the affy and rma packages from the Bioconductor Project (www.bioconductor.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Xin,,Ye
| | Sample_contact_institute | Johns Hopkins School of Medicine
| | Sample_contact_address | 725 N Wolfe Street, PCTB 805
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21205
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM586nnn/GSM586846/suppl/GSM586846_Fz4_WT_2.CEL.gz
| | Sample_series_id | GSE23781
| | Sample_data_row_count | 45101
| | |
|
GSM586847 | GPL1261 |
|
Fz4 WT 3
|
E13.5 Fz4+/+ embronic kidneys from litter 3
|
sample type: E13.5 whole kidney Fz4+/+
age: E13.5
tissue: kidney
genotype: Fz4+/+
|
Gene expression data from whole kidneys at E13.5
|
| Sample_geo_accession | GSM586847
| | Sample_status | Public on Mar 23 2011
| | Sample_submission_date | Aug 24 2010
| | Sample_last_update_date | Mar 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | N/A
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and RNeasy according to manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| | Sample_hyb_protocol | Hybridization performed by Johns Hopkins Microarray Core Facility with their standard protocol. Samples were hybridized to Affymetrix MOE430.2 array
| | Sample_scan_protocol | Scanning were performed by Johns Hopkins Microarray Core Facility with their standard protocol
| | Sample_data_processing | Raw data was processed in R2.9.1 using the affy and rma packages from the Bioconductor Project (www.bioconductor.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Xin,,Ye
| | Sample_contact_institute | Johns Hopkins School of Medicine
| | Sample_contact_address | 725 N Wolfe Street, PCTB 805
| | Sample_contact_city | Baltimore
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21205
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM586nnn/GSM586847/suppl/GSM586847_Fz4_WT_3.CEL.gz
| | Sample_series_id | GSE23781
| | Sample_data_row_count | 45101
| | |
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