Search results for the GEO ID: GSE23923  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM589801 | GPL1261 |
|
Luc control esiRNA, biological rep1
|
R1/E ESC
|
cell type: R1/E ESC
RNAi: Luciferase
|
Gene expression data from mouse ESC after 48h RNAi against Luciferase
|
| Sample_geo_accession | GSM589801
| | Sample_status | Public on May 19 2011
| | Sample_submission_date | Sep 01 2010
| | Sample_last_update_date | May 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | R1/E ES cells were reversely transfected in a 12well plate using 800ng esiRNA and 2ul Lipofectamine2000 (Invitrogen) and 80000cells/well. Procedure according to manufacture's protocol
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit protocol including DNaseI digest
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were normalized with GC-RMA method using Partek Genomics Suite 6.4 (6.09.0129). Properties: quantile normalizytion, GCRMA background correction, median polish probe set summarization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Maciej,,Paszkowski-Rogacz
| | Sample_contact_laboratory | Buchholz
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589801/suppl/GSM589801.CEL.gz
| | Sample_series_id | GSE23923
| | Sample_series_id | GSE24030
| | Sample_data_row_count | 45101
| | |
|
GSM589802 | GPL1261 |
|
Luc control esiRNA, biological rep2
|
R1/E ESC
|
cell type: R1/E ESC
RNAi: Luciferase
|
Gene expression data from mouse ESC after 48h RNAi against Luciferase
|
| Sample_geo_accession | GSM589802
| | Sample_status | Public on May 19 2011
| | Sample_submission_date | Sep 01 2010
| | Sample_last_update_date | May 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | R1/E ES cells were reversely transfected in a 12well plate using 800ng esiRNA and 2ul Lipofectamine2000 (Invitrogen) and 80000cells/well. Procedure according to manufacture's protocol
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit protocol including DNaseI digest
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were normalized with GC-RMA method using Partek Genomics Suite 6.4 (6.09.0129). Properties: quantile normalizytion, GCRMA background correction, median polish probe set summarization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Maciej,,Paszkowski-Rogacz
| | Sample_contact_laboratory | Buchholz
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589802/suppl/GSM589802.CEL.gz
| | Sample_series_id | GSE23923
| | Sample_series_id | GSE24030
| | Sample_data_row_count | 45101
| | |
|
GSM589803 | GPL1261 |
|
Luc control esiRNA, biological rep3
|
R1/E ESC
|
cell type: R1/E ESC
RNAi: Luciferase
|
Gene expression data from mouse ESC after 48h RNAi against Luciferase
|
| Sample_geo_accession | GSM589803
| | Sample_status | Public on May 19 2011
| | Sample_submission_date | Sep 01 2010
| | Sample_last_update_date | May 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | R1/E ES cells were reversely transfected in a 12well plate using 800ng esiRNA and 2ul Lipofectamine2000 (Invitrogen) and 80000cells/well. Procedure according to manufacture's protocol
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit protocol including DNaseI digest
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were normalized with GC-RMA method using Partek Genomics Suite 6.4 (6.09.0129). Properties: quantile normalizytion, GCRMA background correction, median polish probe set summarization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Maciej,,Paszkowski-Rogacz
| | Sample_contact_laboratory | Buchholz
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589803/suppl/GSM589803.CEL.gz
| | Sample_series_id | GSE23923
| | Sample_series_id | GSE24030
| | Sample_data_row_count | 45101
| | |
|
GSM589804 | GPL1261 |
|
Luc control esiRNA, biological rep4
|
R1/E ESC
|
cell type: R1/E ESC
RNAi: Luciferase
|
Gene expression data from mouse ESC after 48h RNAi against Luciferase
|
| Sample_geo_accession | GSM589804
| | Sample_status | Public on May 19 2011
| | Sample_submission_date | Sep 01 2010
| | Sample_last_update_date | May 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | R1/E ES cells were reversely transfected in a 12well plate using 800ng esiRNA and 2ul Lipofectamine2000 (Invitrogen) and 80000cells/well. Procedure according to manufacture's protocol
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit protocol including DNaseI digest
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were normalized with GC-RMA method using Partek Genomics Suite 6.4 (6.09.0129). Properties: quantile normalizytion, GCRMA background correction, median polish probe set summarization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Maciej,,Paszkowski-Rogacz
| | Sample_contact_laboratory | Buchholz
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589804/suppl/GSM589804.CEL.gz
| | Sample_series_id | GSE23923
| | Sample_series_id | GSE24030
| | Sample_data_row_count | 45101
| | |
|
GSM589805 | GPL1261 |
|
Rad21 esiRNA, biological rep1
|
R1/E ESC
|
cell type: R1/E ESC
RNAi: Rad21
|
Gene expression data from mouse ESC after 48h RNAi against Rad21
|
| Sample_geo_accession | GSM589805
| | Sample_status | Public on May 19 2011
| | Sample_submission_date | Sep 01 2010
| | Sample_last_update_date | May 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | R1/E ES cells were reversely transfected in a 12well plate using 800ng esiRNA and 2ul Lipofectamine2000 (Invitrogen) and 80000cells/well. Procedure according to manufacture's protocol
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit protocol including DNaseI digest
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were normalized with GC-RMA method using Partek Genomics Suite 6.4 (6.09.0129). Properties: quantile normalizytion, GCRMA background correction, median polish probe set summarization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Maciej,,Paszkowski-Rogacz
| | Sample_contact_laboratory | Buchholz
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589805/suppl/GSM589805.CEL.gz
| | Sample_series_id | GSE23923
| | Sample_series_id | GSE24030
| | Sample_data_row_count | 45101
| | |
|
GSM589806 | GPL1261 |
|
Rad21 esiRNA, biological rep2
|
R1/E ESC
|
cell type: R1/E ESC
RNAi: Rad21
|
Gene expression data from mouse ESC after 48h RNAi against Rad21
|
| Sample_geo_accession | GSM589806
| | Sample_status | Public on May 19 2011
| | Sample_submission_date | Sep 01 2010
| | Sample_last_update_date | May 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | R1/E ES cells were reversely transfected in a 12well plate using 800ng esiRNA and 2ul Lipofectamine2000 (Invitrogen) and 80000cells/well. Procedure according to manufacture's protocol
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit protocol including DNaseI digest
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were normalized with GC-RMA method using Partek Genomics Suite 6.4 (6.09.0129). Properties: quantile normalizytion, GCRMA background correction, median polish probe set summarization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Maciej,,Paszkowski-Rogacz
| | Sample_contact_laboratory | Buchholz
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589806/suppl/GSM589806.CEL.gz
| | Sample_series_id | GSE23923
| | Sample_series_id | GSE24030
| | Sample_data_row_count | 45101
| | |
|
GSM589807 | GPL1261 |
|
Rad21 esiRNA, biological rep3
|
R1/E ESC
|
cell type: R1/E ESC
RNAi: Rad21
|
Gene expression data from mouse ESC after 48h RNAi against Rad21
|
| Sample_geo_accession | GSM589807
| | Sample_status | Public on May 19 2011
| | Sample_submission_date | Sep 01 2010
| | Sample_last_update_date | May 19 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | R1/E ES cells were reversely transfected in a 12well plate using 800ng esiRNA and 2ul Lipofectamine2000 (Invitrogen) and 80000cells/well. Procedure according to manufacture's protocol
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini Kit protocol including DNaseI digest
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Mouse 430 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were normalized with GC-RMA method using Partek Genomics Suite 6.4 (6.09.0129). Properties: quantile normalizytion, GCRMA background correction, median polish probe set summarization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Maciej,,Paszkowski-Rogacz
| | Sample_contact_laboratory | Buchholz
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589807/suppl/GSM589807.CEL.gz
| | Sample_series_id | GSE23923
| | Sample_series_id | GSE24030
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
