Search results for the GEO ID: GSE23935 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM589933 | GPL570 |
|
Cell culture from patient1 untreated
|
Primary culture of human glioblatoma
|
treatment group: untreated
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE169HGU133Plus_2.0_210207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589933
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589933/suppl/GSM589933.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589934 | GPL570 |
|
Cell culture from patient1 treated with LY2109761
|
Primary culture of human glioblatoma
|
treatment group: treated with LY2109761
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE170HGU133Plus_2.0_210207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589934
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589934/suppl/GSM589934.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589935 | GPL570 |
|
Cell culture from patient2 untreated
|
Primary culture of human glioblatoma
|
treatment group: untreated
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE173HGU133Plus_2.0_210207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589935
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589935/suppl/GSM589935.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589936 | GPL570 |
|
Cell culture from patient2 treated with LY2109761
|
Primary culture of human glioblatoma
|
treatment group: treated with LY2109761
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE174HGU133Plus_2.0_210207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589936
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589936/suppl/GSM589936.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589937 | GPL570 |
|
Cell culture from patient3 untreated
|
Primary culture of human glioblatoma
|
treatment group: untreated
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE177HGU133Plus_2.0_210207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589937
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589937/suppl/GSM589937.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589938 | GPL570 |
|
Cell culture from patient3 treated with LY2109761
|
Primary culture of human glioblatoma
|
treatment group: treated with LY2109761
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE178HGU133Plus_2.0_210207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589938
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589938/suppl/GSM589938.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589939 | GPL570 |
|
Cell culture from patient4 untreated
|
Primary culture of human glioblatoma
|
treatment group: untreated
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE181HGU133Plus_2.0_210207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589939
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589939/suppl/GSM589939.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589940 | GPL570 |
|
Cell culture from patient4 treated with LY2109761
|
Primary culture of human glioblatoma
|
treatment group: treated with LY2109761
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE182HGU133Plus_2.0_210207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589940
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589940/suppl/GSM589940.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589941 | GPL570 |
|
Cell culture from patient5 untreated
|
Primary culture of human glioblatoma
|
treatment group: untreated
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE185HGU133Plus_2.0_220207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589941
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589941/suppl/GSM589941.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589942 | GPL570 |
|
Cell culture from patient5 treated with LY2109761
|
Primary culture of human glioblatoma
|
treatment group: treated with LY2109761
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE186HGU133Plus_2.0_220207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589942
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589942/suppl/GSM589942.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589943 | GPL570 |
|
Cell culture from patient6 untreated
|
Primary culture of human glioblatoma
|
treatment group: untreated
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE189HGU133Plus_2.0_220207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589943
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589943/suppl/GSM589943.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589944 | GPL570 |
|
Cell culture from patient6 treated with LY2109761
|
Primary culture of human glioblatoma
|
treatment group: treated with LY2109761
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE190HGU133Plus_2.0_220207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589944
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589944/suppl/GSM589944.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589945 | GPL570 |
|
Cell culture from patient7 untreated
|
Primary culture of human glioblatoma
|
treatment group: untreated
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE193HGU133Plus_2.0_220207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589945
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589945/suppl/GSM589945.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589946 | GPL570 |
|
Cell culture from patient7 treated with LY2109761
|
Primary culture of human glioblatoma
|
treatment group: treated with LY2109761
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE194HGU133Plus_2.0_220207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589946
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589946/suppl/GSM589946.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589947 | GPL570 |
|
Cell culture from patient8 untreated
|
Primary culture of human glioblatoma
|
treatment group: untreated
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE197HGU133Plus_2.0_220207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589947
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589947/suppl/GSM589947.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589948 | GPL570 |
|
Cell culture from patient8 treated with LY2109761
|
Primary culture of human glioblatoma
|
treatment group: treated with LY2109761
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE198HGU133Plus_2.0_220207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589948
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589948/suppl/GSM589948.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589949 | GPL570 |
|
Cell culture from patient9 untreated
|
Primary culture of human glioblatoma
|
treatment group: untreated
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE201HGU133Plus_2.0_230207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589949
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589949/suppl/GSM589949.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589950 | GPL570 |
|
Cell culture from patient9 treated with LY2109761
|
Primary culture of human glioblatoma
|
treatment group: treated with LY2109761
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE202HGU133Plus_2.0_230207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589950
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589950/suppl/GSM589950.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589951 | GPL570 |
|
Cell culture from patient10 untreated
|
Primary culture of human glioblatoma
|
treatment group: untreated
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE205HGU133Plus_2.0_230207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589951
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589951/suppl/GSM589951.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589952 | GPL570 |
|
Cell culture from patient10 treated with LY2109761
|
Primary culture of human glioblatoma
|
treatment group: treated with LY2109761
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE206HGU133Plus_2.0_230207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589952
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589952/suppl/GSM589952.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589953 | GPL570 |
|
Cell culture from patient11 untreated
|
Primary culture of human glioblatoma
|
treatment group: untreated
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE209HGU133Plus_2.0_230207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589953
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589953/suppl/GSM589953.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
GSM589954 | GPL570 |
|
Cell culture from patient11 treated with LY2109761
|
Primary culture of human glioblatoma
|
treatment group: treated with LY2109761
cell type: Primary culture of human glioblatoma
tumor type: Glioblastoma
|
07SE210HGU133Plus_2.0_230207.CEL
Gene expression of primary culture glioblastoma
|
Sample_geo_accession | GSM589954
| Sample_status | Public on Jan 27 2011
| Sample_submission_date | Sep 01 2010
| Sample_last_update_date | Jan 27 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with 2microM LY2109761 for 3 hours
| Sample_growth_protocol_ch1 | Patient derived cells were grown in culture in the presence of DMEM+10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Rneasy kit (QIAGEN)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA was synthesized with the IVT Labeling kit (Affymetrix)
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133 plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with GeneSpring GX v7.3
| Sample_platform_id | GPL570
| Sample_contact_name | Joan,,Seoane
| Sample_contact_institute | VHIO
| Sample_contact_address | Vall d'Hebron 119-129
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08029
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM589nnn/GSM589954/suppl/GSM589954.CEL.gz
| Sample_series_id | GSE23935
| Sample_data_row_count | 54675
| |
|
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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