Search results for the GEO ID: GSE23952  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM590166 | GPL570 |
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Panc-1 Untreated Control 1
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Panc-1 Pancreatic Cancer Cells
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tissue: Pancreas
cell line: Panc-1
treatment group: Untreated Control
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Gene expression data from untreated Panc-1 pancreatic cancer cell lines
|
| Sample_geo_accession | GSM590166
| | Sample_status | Public on Sep 03 2010
| | Sample_submission_date | Sep 02 2010
| | Sample_last_update_date | Sep 02 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were serum-starved for 24 h and then treated with 5 ng/mL porcine transforming growth factor beta 1 (TGF-beta, R&D Systems, Minneapolis, MN) for 48 hours.
| | Sample_growth_protocol_ch1 | Panc-1 cells were maintained in RPMI-1640 medium with glutamine, supplemented with 10% FBS, penicillin, and streptomycin and tested for mycoplasma contamination. All tissue culture media and media supplements were purchased from Life Technologies (Gaithersburg, MD).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the harvested cells using Trizol (Invitrogen) and cleanup performed with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepare from 3-5 ug total RNA using standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Ann Arbor quantile-normalized trimmed-mean method (PMID: 15705192).
| | Sample_platform_id | GPL570
| | Sample_contact_name | brian,,haab
| | Sample_contact_email | brian.haab@vai.org
| | Sample_contact_phone | 6162345268
| | Sample_contact_department | lab of cancer immunodiagnostics
| | Sample_contact_institute | van andel institute
| | Sample_contact_address | 333 bostwick avenue NE
| | Sample_contact_city | grand rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM590nnn/GSM590166/suppl/GSM590166.CEL.gz
| | Sample_series_id | GSE23952
| | Sample_data_row_count | 54675
| | |
|
GSM590167 | GPL570 |
|
Panc-1 Untreated Control 2
|
Panc-1 Pancreatic Cancer Cells
|
tissue: Pancreas
cell line: Panc-1
treatment group: Untreated Control
|
Gene expression data from untreated Panc-1 pancreatic cancer cell lines
|
| Sample_geo_accession | GSM590167
| | Sample_status | Public on Sep 03 2010
| | Sample_submission_date | Sep 02 2010
| | Sample_last_update_date | Sep 02 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were serum-starved for 24 h and then treated with 5 ng/mL porcine transforming growth factor beta 1 (TGF-beta, R&D Systems, Minneapolis, MN) for 48 hours.
| | Sample_growth_protocol_ch1 | Panc-1 cells were maintained in RPMI-1640 medium with glutamine, supplemented with 10% FBS, penicillin, and streptomycin and tested for mycoplasma contamination. All tissue culture media and media supplements were purchased from Life Technologies (Gaithersburg, MD).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the harvested cells using Trizol (Invitrogen) and cleanup performed with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepare from 3-5 ug total RNA using standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Ann Arbor quantile-normalized trimmed-mean method (PMID: 15705192).
| | Sample_platform_id | GPL570
| | Sample_contact_name | brian,,haab
| | Sample_contact_email | brian.haab@vai.org
| | Sample_contact_phone | 6162345268
| | Sample_contact_department | lab of cancer immunodiagnostics
| | Sample_contact_institute | van andel institute
| | Sample_contact_address | 333 bostwick avenue NE
| | Sample_contact_city | grand rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM590nnn/GSM590167/suppl/GSM590167.CEL.gz
| | Sample_series_id | GSE23952
| | Sample_data_row_count | 54675
| | |
|
GSM590168 | GPL570 |
|
Panc-1 Untreated Control 3
|
Panc-1 Pancreatic Cancer Cells
|
tissue: Pancreas
cell line: Panc-1
treatment group: Untreated Control
|
Gene expression data from untreated Panc-1 pancreatic cancer cell lines
|
| Sample_geo_accession | GSM590168
| | Sample_status | Public on Sep 03 2010
| | Sample_submission_date | Sep 02 2010
| | Sample_last_update_date | Sep 02 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were serum-starved for 24 h and then treated with 5 ng/mL porcine transforming growth factor beta 1 (TGF-beta, R&D Systems, Minneapolis, MN) for 48 hours.
| | Sample_growth_protocol_ch1 | Panc-1 cells were maintained in RPMI-1640 medium with glutamine, supplemented with 10% FBS, penicillin, and streptomycin and tested for mycoplasma contamination. All tissue culture media and media supplements were purchased from Life Technologies (Gaithersburg, MD).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the harvested cells using Trizol (Invitrogen) and cleanup performed with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepare from 3-5 ug total RNA using standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Ann Arbor quantile-normalized trimmed-mean method (PMID: 15705192).
| | Sample_platform_id | GPL570
| | Sample_contact_name | brian,,haab
| | Sample_contact_email | brian.haab@vai.org
| | Sample_contact_phone | 6162345268
| | Sample_contact_department | lab of cancer immunodiagnostics
| | Sample_contact_institute | van andel institute
| | Sample_contact_address | 333 bostwick avenue NE
| | Sample_contact_city | grand rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM590nnn/GSM590168/suppl/GSM590168.CEL.gz
| | Sample_series_id | GSE23952
| | Sample_data_row_count | 54675
| | |
|
GSM590169 | GPL570 |
|
Panc-1 TGFβ Treated 1 48 hr
|
Panc-1 Pancreatic Cancer Cells
|
tissue: Pancreas
cell line: Panc-1
treatment group: TGFβ Treated 48 hr
|
Gene expression data from transforming growth factor beta treated Panc-1 pancreatic cancer cell lines after 48 hours
|
| Sample_geo_accession | GSM590169
| | Sample_status | Public on Sep 03 2010
| | Sample_submission_date | Sep 02 2010
| | Sample_last_update_date | Sep 02 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were serum-starved for 24 h and then treated with 5 ng/mL porcine transforming growth factor beta 1 (TGF-beta, R&D Systems, Minneapolis, MN) for 48 hours.
| | Sample_growth_protocol_ch1 | Panc-1 cells were maintained in RPMI-1640 medium with glutamine, supplemented with 10% FBS, penicillin, and streptomycin and tested for mycoplasma contamination. All tissue culture media and media supplements were purchased from Life Technologies (Gaithersburg, MD).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the harvested cells using Trizol (Invitrogen) and cleanup performed with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepare from 3-5 ug total RNA using standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Ann Arbor quantile-normalized trimmed-mean method (PMID: 15705192).
| | Sample_platform_id | GPL570
| | Sample_contact_name | brian,,haab
| | Sample_contact_email | brian.haab@vai.org
| | Sample_contact_phone | 6162345268
| | Sample_contact_department | lab of cancer immunodiagnostics
| | Sample_contact_institute | van andel institute
| | Sample_contact_address | 333 bostwick avenue NE
| | Sample_contact_city | grand rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM590nnn/GSM590169/suppl/GSM590169.CEL.gz
| | Sample_series_id | GSE23952
| | Sample_data_row_count | 54675
| | |
|
GSM590170 | GPL570 |
|
Panc-1 TGFβ Treated 2 48 hr
|
Panc-1 Pancreatic Cancer Cells
|
tissue: Pancreas
cell line: Panc-1
treatment group: TGFβ Treated 48 hr
|
Gene expression data from transforming growth factor beta treated Panc-1 pancreatic cancer cell lines after 48 hours
|
| Sample_geo_accession | GSM590170
| | Sample_status | Public on Sep 03 2010
| | Sample_submission_date | Sep 02 2010
| | Sample_last_update_date | Sep 02 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were serum-starved for 24 h and then treated with 5 ng/mL porcine transforming growth factor beta 1 (TGF-beta, R&D Systems, Minneapolis, MN) for 48 hours.
| | Sample_growth_protocol_ch1 | Panc-1 cells were maintained in RPMI-1640 medium with glutamine, supplemented with 10% FBS, penicillin, and streptomycin and tested for mycoplasma contamination. All tissue culture media and media supplements were purchased from Life Technologies (Gaithersburg, MD).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the harvested cells using Trizol (Invitrogen) and cleanup performed with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepare from 3-5 ug total RNA using standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Ann Arbor quantile-normalized trimmed-mean method (PMID: 15705192).
| | Sample_platform_id | GPL570
| | Sample_contact_name | brian,,haab
| | Sample_contact_email | brian.haab@vai.org
| | Sample_contact_phone | 6162345268
| | Sample_contact_department | lab of cancer immunodiagnostics
| | Sample_contact_institute | van andel institute
| | Sample_contact_address | 333 bostwick avenue NE
| | Sample_contact_city | grand rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM590nnn/GSM590170/suppl/GSM590170.CEL.gz
| | Sample_series_id | GSE23952
| | Sample_data_row_count | 54675
| | |
|
GSM590171 | GPL570 |
|
Panc-1 TGFβ Treated 3 48 hr
|
Panc-1 Pancreatic Cancer Cells
|
tissue: Pancreas
cell line: Panc-1
treatment group: TGFβ Treated 48 hr
|
Gene expression data from transforming growth factor beta treated Panc-1 pancreatic cancer cell lines after 48 hours
|
| Sample_geo_accession | GSM590171
| | Sample_status | Public on Sep 03 2010
| | Sample_submission_date | Sep 02 2010
| | Sample_last_update_date | Sep 02 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were serum-starved for 24 h and then treated with 5 ng/mL porcine transforming growth factor beta 1 (TGF-beta, R&D Systems, Minneapolis, MN) for 48 hours.
| | Sample_growth_protocol_ch1 | Panc-1 cells were maintained in RPMI-1640 medium with glutamine, supplemented with 10% FBS, penicillin, and streptomycin and tested for mycoplasma contamination. All tissue culture media and media supplements were purchased from Life Technologies (Gaithersburg, MD).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the harvested cells using Trizol (Invitrogen) and cleanup performed with an RNeasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepare from 3-5 ug total RNA using standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Ann Arbor quantile-normalized trimmed-mean method (PMID: 15705192).
| | Sample_platform_id | GPL570
| | Sample_contact_name | brian,,haab
| | Sample_contact_email | brian.haab@vai.org
| | Sample_contact_phone | 6162345268
| | Sample_contact_department | lab of cancer immunodiagnostics
| | Sample_contact_institute | van andel institute
| | Sample_contact_address | 333 bostwick avenue NE
| | Sample_contact_city | grand rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM590nnn/GSM590171/suppl/GSM590171.CEL.gz
| | Sample_series_id | GSE23952
| | Sample_data_row_count | 54675
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