Search results for the GEO ID: GSE23972  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM590417 | GPL1261 |
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Thymic tumor from mouse RJ10
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transformed T cells from a mouse thymic lymphoma
|
age: 18-20 weeks
disease state: lymphoma
tissue: thymus
cell type: transformed T cells
genotype/variation: IkL/L Notch1+/+ CD4-Cre+
|
gene expression data from a thymic tumor from an Ikaros deficient thymic lymphoma
|
| Sample_geo_accession | GSM590417
| | Sample_status | Public on Sep 03 2010
| | Sample_submission_date | Sep 03 2010
| | Sample_last_update_date | Sep 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Thymic lymphomas were dissected from euthanized sick mice and tumor cells collected after tissue disruption between frosted ends of microscope slides
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAs were extracted with the RNAeasy kit, following the manufacturer's instructions (including DNAse I treatment)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45C on GeneChip 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned with a GeneChip® Scanner 3000 7G System
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Target intensity was set at 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Philippe,,Kastner
| | Sample_contact_email | kastner@igbmc.u-strasbg.fr
| | Sample_contact_phone | 33-3 88 65 34 72
| | Sample_contact_institute | IGBMC
| | Sample_contact_address |
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM590nnn/GSM590417/suppl/GSM590417.CEL.gz
| | Sample_series_id | GSE23972
| | Sample_data_row_count | 45101
| | |
|
GSM590418 | GPL1261 |
|
Thymic tumor from mouse RJ11
|
transformed T cells from a mouse thymic lymphoma
|
age: 18-20 weeks
disease state: lymphoma
tissue: thymus
cell type: transformed T cells
genotype/variation: IkL/L Notch1+/+ CD4-Cre+
|
gene expression data from a thymic tumor from an Ikaros deficient thymic lymphoma
|
| Sample_geo_accession | GSM590418
| | Sample_status | Public on Sep 03 2010
| | Sample_submission_date | Sep 03 2010
| | Sample_last_update_date | Sep 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Thymic lymphomas were dissected from euthanized sick mice and tumor cells collected after tissue disruption between frosted ends of microscope slides
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAs were extracted with the RNAeasy kit, following the manufacturer's instructions (including DNAse I treatment)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45C on GeneChip 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned with a GeneChip® Scanner 3000 7G System
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Target intensity was set at 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Philippe,,Kastner
| | Sample_contact_email | kastner@igbmc.u-strasbg.fr
| | Sample_contact_phone | 33-3 88 65 34 72
| | Sample_contact_institute | IGBMC
| | Sample_contact_address |
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM590nnn/GSM590418/suppl/GSM590418.CEL.gz
| | Sample_series_id | GSE23972
| | Sample_data_row_count | 45101
| | |
|
GSM590419 | GPL1261 |
|
Thymic tumor from mouse RJ12
|
transformed T cells from a mouse thymic lymphoma
|
age: 18-20 weeks
disease state: lymphoma
tissue: thymus
cell type: transformed T cells
genotype/variation: IkL/L Notch1+/+ CD4-Cre+
|
gene expression data from a thymic tumor from an Ikaros deficient thymic lymphoma
|
| Sample_geo_accession | GSM590419
| | Sample_status | Public on Sep 03 2010
| | Sample_submission_date | Sep 03 2010
| | Sample_last_update_date | Sep 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Thymic lymphomas were dissected from euthanized sick mice and tumor cells collected after tissue disruption between frosted ends of microscope slides
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAs were extracted with the RNAeasy kit, following the manufacturer's instructions (including DNAse I treatment)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45C on GeneChip 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned with a GeneChip® Scanner 3000 7G System
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Target intensity was set at 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Philippe,,Kastner
| | Sample_contact_email | kastner@igbmc.u-strasbg.fr
| | Sample_contact_phone | 33-3 88 65 34 72
| | Sample_contact_institute | IGBMC
| | Sample_contact_address |
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM590nnn/GSM590419/suppl/GSM590419.CEL.gz
| | Sample_series_id | GSE23972
| | Sample_data_row_count | 45101
| | |
|
GSM590420 | GPL1261 |
|
Thymic tumor from mouse RJ21
|
transformed T cells from a mouse thymic lymphoma
|
age: 8-10 weeks
disease state: lymphoma
tissue: thymus
cell type: transformed T cells
genotype/variation: IkL/L Notch1f/f CD4-Cre+
|
gene expression data from a thymic tumor from an Ikaros deficient thymic lymphoma with a Notch promoter/exon1 deletion
|
| Sample_geo_accession | GSM590420
| | Sample_status | Public on Sep 03 2010
| | Sample_submission_date | Sep 03 2010
| | Sample_last_update_date | Sep 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Thymic lymphomas were dissected from euthanized sick mice and tumor cells collected after tissue disruption between frosted ends of microscope slides
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAs were extracted with the RNAeasy kit, following the manufacturer's instructions (including DNAse I treatment)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45C on GeneChip 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned with a GeneChip® Scanner 3000 7G System
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Target intensity was set at 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Philippe,,Kastner
| | Sample_contact_email | kastner@igbmc.u-strasbg.fr
| | Sample_contact_phone | 33-3 88 65 34 72
| | Sample_contact_institute | IGBMC
| | Sample_contact_address |
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM590nnn/GSM590420/suppl/GSM590420.CEL.gz
| | Sample_series_id | GSE23972
| | Sample_data_row_count | 45101
| | |
|
GSM590421 | GPL1261 |
|
Thymic tumor from mouse RJ27
|
transformed T cells from a mouse thymic lymphoma
|
age: 8-10 weeks
disease state: lymphoma
tissue: thymus
cell type: transformed T cells
genotype/variation: IkL/L Notch1f/f CD4-Cre+
|
gene expression data from a thymic tumor from an Ikaros deficient thymic lymphoma with a Notch promoter/exon1 deletion
|
| Sample_geo_accession | GSM590421
| | Sample_status | Public on Sep 03 2010
| | Sample_submission_date | Sep 03 2010
| | Sample_last_update_date | Sep 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Thymic lymphomas were dissected from euthanized sick mice and tumor cells collected after tissue disruption between frosted ends of microscope slides
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAs were extracted with the RNAeasy kit, following the manufacturer's instructions (including DNAse I treatment)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45C on GeneChip 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned with a GeneChip® Scanner 3000 7G System
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Target intensity was set at 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Philippe,,Kastner
| | Sample_contact_email | kastner@igbmc.u-strasbg.fr
| | Sample_contact_phone | 33-3 88 65 34 72
| | Sample_contact_institute | IGBMC
| | Sample_contact_address |
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM590nnn/GSM590421/suppl/GSM590421.CEL.gz
| | Sample_series_id | GSE23972
| | Sample_data_row_count | 45101
| | |
|
GSM590422 | GPL1261 |
|
Thymic tumor from mouse RJ28
|
transformed T cells from a mouse thymic lymphoma
|
age: 8-10 weeks
disease state: lymphoma
tissue: thymus
cell type: transformed T cells
genotype/variation: IkL/L Notch1f/f CD4-Cre+
|
gene expression data from a thymic tumor from an Ikaros deficient thymic lymphoma with a Notch promoter/exon1 deletion
|
| Sample_geo_accession | GSM590422
| | Sample_status | Public on Sep 03 2010
| | Sample_submission_date | Sep 03 2010
| | Sample_last_update_date | Sep 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Thymic lymphomas were dissected from euthanized sick mice and tumor cells collected after tissue disruption between frosted ends of microscope slides
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAs were extracted with the RNAeasy kit, following the manufacturer's instructions (including DNAse I treatment)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45C on GeneChip 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | Arrays were scanned with a GeneChip® Scanner 3000 7G System
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Target intensity was set at 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Philippe,,Kastner
| | Sample_contact_email | kastner@igbmc.u-strasbg.fr
| | Sample_contact_phone | 33-3 88 65 34 72
| | Sample_contact_institute | IGBMC
| | Sample_contact_address |
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM590nnn/GSM590422/suppl/GSM590422.CEL.gz
| | Sample_series_id | GSE23972
| | Sample_data_row_count | 45101
| | |
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