Search results for the GEO ID: GSE2401  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM45184 | GPL341 |
|
Animal 10
|
Kidney
|
|
Control
|
| Sample_geo_accession | GSM45184
| | Sample_status | Public on Mar 12 2005
| | Sample_submission_date | Mar 11 2005
| | Sample_last_update_date | May 27 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Timm,,Westhoff
| | Sample_contact_email | timm.westhoff@charite.de
| | Sample_contact_phone | 0049308445641420
| | Sample_contact_department | Medizinische Klinik IV
| | Sample_contact_institute | Charite, Campus Benjamin Franklin
| | Sample_contact_address | Hindenburgdamm 30
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 12200
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45184/suppl/GSM45184.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45184/suppl/GSM45184.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45184/suppl/GSM45184.RPT.gz
| | Sample_series_id | GSE2401
| | Sample_data_row_count | 15923
| | |
|
GSM45186 | GPL341 |
|
Animal 11
|
Kidney
|
|
Control
|
| Sample_geo_accession | GSM45186
| | Sample_status | Public on Mar 12 2005
| | Sample_submission_date | Mar 11 2005
| | Sample_last_update_date | May 27 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Timm,,Westhoff
| | Sample_contact_email | timm.westhoff@charite.de
| | Sample_contact_phone | 0049308445641420
| | Sample_contact_department | Medizinische Klinik IV
| | Sample_contact_institute | Charite, Campus Benjamin Franklin
| | Sample_contact_address | Hindenburgdamm 30
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 12200
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45186/suppl/GSM45186.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45186/suppl/GSM45186.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45186/suppl/GSM45186.RPT.gz
| | Sample_series_id | GSE2401
| | Sample_data_row_count | 15923
| | |
|
GSM45187 | GPL341 |
|
Animal 12
|
Kidney
|
|
Control
|
| Sample_geo_accession | GSM45187
| | Sample_status | Public on Mar 12 2005
| | Sample_submission_date | Mar 11 2005
| | Sample_last_update_date | May 27 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Timm,,Westhoff
| | Sample_contact_email | timm.westhoff@charite.de
| | Sample_contact_phone | 0049308445641420
| | Sample_contact_department | Medizinische Klinik IV
| | Sample_contact_institute | Charite, Campus Benjamin Franklin
| | Sample_contact_address | Hindenburgdamm 30
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 12200
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45187/suppl/GSM45187.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45187/suppl/GSM45187.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45187/suppl/GSM45187.RPT.gz
| | Sample_series_id | GSE2401
| | Sample_data_row_count | 15923
| | |
|
GSM45188 | GPL341 |
|
Animal 3
|
Kidney
|
|
Case
|
| Sample_geo_accession | GSM45188
| | Sample_status | Public on Mar 12 2005
| | Sample_submission_date | Mar 11 2005
| | Sample_last_update_date | May 27 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Timm,,Westhoff
| | Sample_contact_email | timm.westhoff@charite.de
| | Sample_contact_phone | 0049308445641420
| | Sample_contact_department | Medizinische Klinik IV
| | Sample_contact_institute | Charite, Campus Benjamin Franklin
| | Sample_contact_address | Hindenburgdamm 30
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 12200
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45188/suppl/GSM45188.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45188/suppl/GSM45188.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45188/suppl/GSM45188.RPT.gz
| | Sample_series_id | GSE2401
| | Sample_data_row_count | 15923
| | |
|
GSM45189 | GPL341 |
|
Animal 4
|
Kidney
|
|
Control
|
| Sample_geo_accession | GSM45189
| | Sample_status | Public on Mar 12 2005
| | Sample_submission_date | Mar 11 2005
| | Sample_last_update_date | May 27 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Timm,,Westhoff
| | Sample_contact_email | timm.westhoff@charite.de
| | Sample_contact_phone | 0049308445641420
| | Sample_contact_department | Medizinische Klinik IV
| | Sample_contact_institute | Charite, Campus Benjamin Franklin
| | Sample_contact_address | Hindenburgdamm 30
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 12200
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45189/suppl/GSM45189.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45189/suppl/GSM45189.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45189/suppl/GSM45189.RPT.gz
| | Sample_series_id | GSE2401
| | Sample_data_row_count | 15923
| | |
|
GSM45190 | GPL341 |
|
Animal 5
|
Kidney
|
|
Case
|
| Sample_geo_accession | GSM45190
| | Sample_status | Public on Mar 12 2005
| | Sample_submission_date | Mar 11 2005
| | Sample_last_update_date | May 27 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Timm,,Westhoff
| | Sample_contact_email | timm.westhoff@charite.de
| | Sample_contact_phone | 0049308445641420
| | Sample_contact_department | Medizinische Klinik IV
| | Sample_contact_institute | Charite, Campus Benjamin Franklin
| | Sample_contact_address | Hindenburgdamm 30
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 12200
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45190/suppl/GSM45190.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45190/suppl/GSM45190.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45190/suppl/GSM45190.RPT.gz
| | Sample_series_id | GSE2401
| | Sample_data_row_count | 15923
| | |
|
GSM45191 | GPL341 |
|
Animal 7
|
Kidney
|
|
Case
|
| Sample_geo_accession | GSM45191
| | Sample_status | Public on Mar 12 2005
| | Sample_submission_date | Mar 11 2005
| | Sample_last_update_date | May 27 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Timm,,Westhoff
| | Sample_contact_email | timm.westhoff@charite.de
| | Sample_contact_phone | 0049308445641420
| | Sample_contact_department | Medizinische Klinik IV
| | Sample_contact_institute | Charite, Campus Benjamin Franklin
| | Sample_contact_address | Hindenburgdamm 30
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 12200
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45191/suppl/GSM45191.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45191/suppl/GSM45191.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45191/suppl/GSM45191.RPT.gz
| | Sample_series_id | GSE2401
| | Sample_data_row_count | 15923
| | |
|
GSM45192 | GPL341 |
|
Animal 8
|
Kidney
|
|
Case
|
| Sample_geo_accession | GSM45192
| | Sample_status | Public on Mar 12 2005
| | Sample_submission_date | Mar 11 2005
| | Sample_last_update_date | May 27 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Timm,,Westhoff
| | Sample_contact_email | timm.westhoff@charite.de
| | Sample_contact_phone | 0049308445641420
| | Sample_contact_department | Medizinische Klinik IV
| | Sample_contact_institute | Charite, Campus Benjamin Franklin
| | Sample_contact_address | Hindenburgdamm 30
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 12200
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45192/suppl/GSM45192.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45192/suppl/GSM45192.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45192/suppl/GSM45192.RPT.gz
| | Sample_series_id | GSE2401
| | Sample_data_row_count | 15923
| | |
|
GSM45193 | GPL341 |
|
Animal 9
|
Kidney
|
|
Control
|
| Sample_geo_accession | GSM45193
| | Sample_status | Public on Mar 12 2005
| | Sample_submission_date | Mar 11 2005
| | Sample_last_update_date | May 27 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL341
| | Sample_contact_name | Timm,,Westhoff
| | Sample_contact_email | timm.westhoff@charite.de
| | Sample_contact_phone | 0049308445641420
| | Sample_contact_department | Medizinische Klinik IV
| | Sample_contact_institute | Charite, Campus Benjamin Franklin
| | Sample_contact_address | Hindenburgdamm 30
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 12200
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45193/suppl/GSM45193.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45193/suppl/GSM45193.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45193/suppl/GSM45193.RPT.gz
| | Sample_series_id | GSE2401
| | Sample_data_row_count | 15923
| | |
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| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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Select expression type |
| Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
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Regulation type |
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Fold change |
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p-value |
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B. Absolute calls (Transcribed/Not-detected) |
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| Derive calls within/across groups |
Within groups |
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Detection status |
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Percentage detection |
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Across groups |
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Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
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Second group:
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Filter results by number of probes |
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