Search results for the GEO ID: GSE24128  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM594025 | GPL96 |
|
PZ_U133A_2_10-1187
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: high
|
CCND1Hi
|
| Sample_geo_accession | GSM594025
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594025/suppl/GSM594025.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594026 | GPL96 |
|
PZ_U133A_2__1_783NR
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: low
|
CCND1Lo
|
| Sample_geo_accession | GSM594026
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594026/suppl/GSM594026.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594027 | GPL96 |
|
PZ_U133A_2_2_934
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: high
|
CCND1Hi
|
| Sample_geo_accession | GSM594027
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594027/suppl/GSM594027.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594028 | GPL96 |
|
PZ_U133A_2_3-1003
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: high
|
CCND1Hi
|
| Sample_geo_accession | GSM594028
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594028/suppl/GSM594028.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594029 | GPL96 |
|
PZ_U133A_2_3_1033
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: low
|
CCND1Lo
|
| Sample_geo_accession | GSM594029
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594029/suppl/GSM594029.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594030 | GPL96 |
|
PZ_U133A_2_4_1137
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: low
|
CCND1Lo
|
| Sample_geo_accession | GSM594030
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594030/suppl/GSM594030.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594031 | GPL96 |
|
PZ_U133A_2_4-795
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: high
|
CCND1Hi
|
| Sample_geo_accession | GSM594031
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594031/suppl/GSM594031.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594032 | GPL96 |
|
PZ_U133A_2_5_1169
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: low
|
CCND1Lo
|
| Sample_geo_accession | GSM594032
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594032/suppl/GSM594032.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594033 | GPL96 |
|
PZ_U133A_2_6-1001-rep
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: high
|
CCND1Hi
|
| Sample_geo_accession | GSM594033
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594033/suppl/GSM594033.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594034 | GPL96 |
|
PZ_U133A_2_6_1304
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: low
|
CCND1Lo
|
| Sample_geo_accession | GSM594034
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594034/suppl/GSM594034.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594035 | GPL96 |
|
PZ_U133A_2_7-1016
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: low
|
CCND1Lo
|
| Sample_geo_accession | GSM594035
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594035/suppl/GSM594035.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594036 | GPL96 |
|
PZ_U133A_2_7_1348
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: low
|
CCND1Lo
|
| Sample_geo_accession | GSM594036
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594036/suppl/GSM594036.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594037 | GPL96 |
|
PZ_U133A_2_8-1195
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: low
|
CCND1Lo
|
| Sample_geo_accession | GSM594037
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594037/suppl/GSM594037.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594038 | GPL96 |
|
PZ_U133A_2_8_1392
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: low
|
CCND1Lo
|
| Sample_geo_accession | GSM594038
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594038/suppl/GSM594038.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594039 | GPL96 |
|
PZ_U133A_2_9_1426
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: low
|
CCND1Lo
|
| Sample_geo_accession | GSM594039
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594039/suppl/GSM594039.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
GSM594040 | GPL96 |
|
PZ_U133A_2_9-898
|
bone marrow
|
cell type: CD138-selected plasma cells
cyclin d1 expression level: low
|
CCND1Lo
|
| Sample_geo_accession | GSM594040
| | Sample_status | Public on Sep 15 2010
| | Sample_submission_date | Sep 14 2010
| | Sample_last_update_date | Sep 14 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized according to manufactuer's instructions on U133A 2 Array. GeneChips were washed and stained as per manufacturer's instructions.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Lakshmanan,K,Iyer
| | Sample_contact_email | liyer01@tufts.edu
| | Sample_contact_phone | 6176360329
| | Sample_contact_laboratory | Genomic Core, Center for Neuroscience Research
| | Sample_contact_department | Neuroscience
| | Sample_contact_institute | Tufts University
| | Sample_contact_address | 136 Harrison Ave
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02038
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.neurosci.tufts.edu/research_asst_profs/iyer/iyer.html
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594040/suppl/GSM594040.CEL.gz
| | Sample_series_id | GSE24128
| | Sample_data_row_count | 22215
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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