Search results for the GEO ID: GSE24154  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM594444 | GPL10175 |
|
CNE2 in vitro
|
in vitro cultured cells
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parental line: CNE2
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| Sample_geo_accession | GSM594444
| | Sample_status | Public on Feb 14 2011
| | Sample_submission_date | Sep 15 2010
| | Sample_last_update_date | Feb 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | R-Phycoerythrin Streptavidin (SAPE), from Molecular Probes, 1 mg/ml ( we use 6 ul per reaction )
| | Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with MBNI re-mapped CDF files, version 12.
| | Sample_platform_id | GPL10175
| | Sample_contact_name | Karl,,Dykema
| | Sample_contact_laboratory | Lab of Computational Biology
| | Sample_contact_institute | Van Andel Institute
| | Sample_contact_address | 333 Bostwick Ave. NE
| | Sample_contact_city | Grand Rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594444/suppl/GSM594444.CEL.gz
| | Sample_series_id | GSE24154
| | Sample_data_row_count | 17726
| | |
|
GSM594445 | GPL10175 |
|
CNE2 in vivo
|
in vivo xenograft tumors
|
parental line: CNE2
|
|
| Sample_geo_accession | GSM594445
| | Sample_status | Public on Feb 14 2011
| | Sample_submission_date | Sep 15 2010
| | Sample_last_update_date | Feb 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | R-Phycoerythrin Streptavidin (SAPE), from Molecular Probes, 1 mg/ml ( we use 6 ul per reaction )
| | Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with MBNI re-mapped CDF files, version 12.
| | Sample_platform_id | GPL10175
| | Sample_contact_name | Karl,,Dykema
| | Sample_contact_laboratory | Lab of Computational Biology
| | Sample_contact_institute | Van Andel Institute
| | Sample_contact_address | 333 Bostwick Ave. NE
| | Sample_contact_city | Grand Rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594445/suppl/GSM594445.CEL.gz
| | Sample_series_id | GSE24154
| | Sample_data_row_count | 17726
| | |
|
GSM594446 | GPL10175 |
|
S18 in vitro
|
in vitro cultured cells
|
cell line: S18
|
|
| Sample_geo_accession | GSM594446
| | Sample_status | Public on Feb 14 2011
| | Sample_submission_date | Sep 15 2010
| | Sample_last_update_date | Feb 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | R-Phycoerythrin Streptavidin (SAPE), from Molecular Probes, 1 mg/ml ( we use 6 ul per reaction )
| | Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with MBNI re-mapped CDF files, version 12.
| | Sample_platform_id | GPL10175
| | Sample_contact_name | Karl,,Dykema
| | Sample_contact_laboratory | Lab of Computational Biology
| | Sample_contact_institute | Van Andel Institute
| | Sample_contact_address | 333 Bostwick Ave. NE
| | Sample_contact_city | Grand Rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594446/suppl/GSM594446.CEL.gz
| | Sample_series_id | GSE24154
| | Sample_data_row_count | 17726
| | |
|
GSM594447 | GPL10175 |
|
S18 in vivo
|
in vivo xenograft tumors
|
cell line: S18
|
|
| Sample_geo_accession | GSM594447
| | Sample_status | Public on Feb 14 2011
| | Sample_submission_date | Sep 15 2010
| | Sample_last_update_date | Feb 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | R-Phycoerythrin Streptavidin (SAPE), from Molecular Probes, 1 mg/ml ( we use 6 ul per reaction )
| | Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with MBNI re-mapped CDF files, version 12.
| | Sample_platform_id | GPL10175
| | Sample_contact_name | Karl,,Dykema
| | Sample_contact_laboratory | Lab of Computational Biology
| | Sample_contact_institute | Van Andel Institute
| | Sample_contact_address | 333 Bostwick Ave. NE
| | Sample_contact_city | Grand Rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594447/suppl/GSM594447.CEL.gz
| | Sample_series_id | GSE24154
| | Sample_data_row_count | 17726
| | |
|
GSM594448 | GPL10175 |
|
S22 in vitro
|
in vitro cultured cells
|
cell line: S22
|
|
| Sample_geo_accession | GSM594448
| | Sample_status | Public on Feb 14 2011
| | Sample_submission_date | Sep 15 2010
| | Sample_last_update_date | Feb 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | R-Phycoerythrin Streptavidin (SAPE), from Molecular Probes, 1 mg/ml ( we use 6 ul per reaction )
| | Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with MBNI re-mapped CDF files, version 12.
| | Sample_platform_id | GPL10175
| | Sample_contact_name | Karl,,Dykema
| | Sample_contact_laboratory | Lab of Computational Biology
| | Sample_contact_institute | Van Andel Institute
| | Sample_contact_address | 333 Bostwick Ave. NE
| | Sample_contact_city | Grand Rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594448/suppl/GSM594448.CEL.gz
| | Sample_series_id | GSE24154
| | Sample_data_row_count | 17726
| | |
|
GSM594449 | GPL10175 |
|
S22 in vivo
|
in vivo xenograft tumors
|
cell line: S22
|
|
| Sample_geo_accession | GSM594449
| | Sample_status | Public on Feb 14 2011
| | Sample_submission_date | Sep 15 2010
| | Sample_last_update_date | Feb 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | R-Phycoerythrin Streptavidin (SAPE), from Molecular Probes, 1 mg/ml ( we use 6 ul per reaction )
| | Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with MBNI re-mapped CDF files, version 12.
| | Sample_platform_id | GPL10175
| | Sample_contact_name | Karl,,Dykema
| | Sample_contact_laboratory | Lab of Computational Biology
| | Sample_contact_institute | Van Andel Institute
| | Sample_contact_address | 333 Bostwick Ave. NE
| | Sample_contact_city | Grand Rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594449/suppl/GSM594449.CEL.gz
| | Sample_series_id | GSE24154
| | Sample_data_row_count | 17726
| | |
|
GSM594450 | GPL10175 |
|
S26 in vitro
|
in vitro cultured cells
|
cell line: S26
|
|
| Sample_geo_accession | GSM594450
| | Sample_status | Public on Feb 14 2011
| | Sample_submission_date | Sep 15 2010
| | Sample_last_update_date | Feb 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | R-Phycoerythrin Streptavidin (SAPE), from Molecular Probes, 1 mg/ml ( we use 6 ul per reaction )
| | Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with MBNI re-mapped CDF files, version 12.
| | Sample_platform_id | GPL10175
| | Sample_contact_name | Karl,,Dykema
| | Sample_contact_laboratory | Lab of Computational Biology
| | Sample_contact_institute | Van Andel Institute
| | Sample_contact_address | 333 Bostwick Ave. NE
| | Sample_contact_city | Grand Rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594450/suppl/GSM594450.CEL.gz
| | Sample_series_id | GSE24154
| | Sample_data_row_count | 17726
| | |
|
GSM594451 | GPL10175 |
|
S26 in vivo
|
in vivo xenograft tumors
|
cell line: S26
|
|
| Sample_geo_accession | GSM594451
| | Sample_status | Public on Feb 14 2011
| | Sample_submission_date | Sep 15 2010
| | Sample_last_update_date | Feb 15 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | R-Phycoerythrin Streptavidin (SAPE), from Molecular Probes, 1 mg/ml ( we use 6 ul per reaction )
| | Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with MBNI re-mapped CDF files, version 12.
| | Sample_platform_id | GPL10175
| | Sample_contact_name | Karl,,Dykema
| | Sample_contact_laboratory | Lab of Computational Biology
| | Sample_contact_institute | Van Andel Institute
| | Sample_contact_address | 333 Bostwick Ave. NE
| | Sample_contact_city | Grand Rapids
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49503
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM594nnn/GSM594451/suppl/GSM594451.CEL.gz
| | Sample_series_id | GSE24154
| | Sample_data_row_count | 17726
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