Search results for the GEO ID: GSE24199  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM595275 | GPL570 |
|
Side population, biological rep 1
|
SP 732
|
tissue: soft-tissue sarcoma
cell type: Side population cells
|
|
| Sample_geo_accession | GSM595275
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The tumours were stained with Hoeschst Dye, and sorted via flow-cytomentry
| | Sample_growth_protocol_ch1 | The tumours were freshly harvested from human.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagene extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, GeneChips were washed and stained using EukGE-WS2v4
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The .cel files where imported into Genespring GX11 program and summarized using RMA normalization. The expression value of each gene from the SP and NSP fraction of each distinct tumour is normalized to the expression value of that particular gene from the NSP fraction. The NSP normalized matrix is provided as a supplementary file on the Series record.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Qingxia,,Wei
| | Sample_contact_email | wqingxia@hotmail.com
| | Sample_contact_phone | 416-813-7231
| | Sample_contact_laboratory | Alman Lab
| | Sample_contact_department | Development Biology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 101 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595275/suppl/GSM595275.CEL.gz
| | Sample_series_id | GSE24199
| | Sample_data_row_count | 54675
| | |
|
GSM595276 | GPL570 |
|
Non-side population, biological rep 1
|
NSP 732
|
tissue: soft-tissue sarcoma
cell type: Non-side population cells
|
|
| Sample_geo_accession | GSM595276
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The tumours were stained with Hoeschst Dye, and sorted via flow-cytomentry
| | Sample_growth_protocol_ch1 | The tumours were freshly harvested from human.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagene extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, GeneChips were washed and stained using EukGE-WS2v4
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The .cel files where imported into Genespring GX11 program and summarized using RMA normalization. The expression value of each gene from the SP and NSP fraction of each distinct tumour is normalized to the expression value of that particular gene from the NSP fraction. The NSP normalized matrix is provided as a supplementary file on the Series record.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Qingxia,,Wei
| | Sample_contact_email | wqingxia@hotmail.com
| | Sample_contact_phone | 416-813-7231
| | Sample_contact_laboratory | Alman Lab
| | Sample_contact_department | Development Biology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 101 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595276/suppl/GSM595276.CEL.gz
| | Sample_series_id | GSE24199
| | Sample_data_row_count | 54675
| | |
|
GSM595277 | GPL570 |
|
Side population, biological rep 2
|
SP 199
|
tissue: soft-tissue sarcoma
cell type: Side population cells
|
|
| Sample_geo_accession | GSM595277
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The tumours were stained with Hoeschst Dye, and sorted via flow-cytomentry
| | Sample_growth_protocol_ch1 | The tumours were freshly harvested from human.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagene extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, GeneChips were washed and stained using EukGE-WS2v4
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The .cel files where imported into Genespring GX11 program and summarized using RMA normalization. The expression value of each gene from the SP and NSP fraction of each distinct tumour is normalized to the expression value of that particular gene from the NSP fraction. The NSP normalized matrix is provided as a supplementary file on the Series record.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Qingxia,,Wei
| | Sample_contact_email | wqingxia@hotmail.com
| | Sample_contact_phone | 416-813-7231
| | Sample_contact_laboratory | Alman Lab
| | Sample_contact_department | Development Biology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 101 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595277/suppl/GSM595277.CEL.gz
| | Sample_series_id | GSE24199
| | Sample_data_row_count | 54675
| | |
|
GSM595278 | GPL570 |
|
Non-side population, biological rep 2
|
NSP 199
|
tissue: soft-tissue sarcoma
cell type: Non-side population cells
|
|
| Sample_geo_accession | GSM595278
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The tumours were stained with Hoeschst Dye, and sorted via flow-cytomentry
| | Sample_growth_protocol_ch1 | The tumours were freshly harvested from human.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagene extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, GeneChips were washed and stained using EukGE-WS2v4
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The .cel files where imported into Genespring GX11 program and summarized using RMA normalization. The expression value of each gene from the SP and NSP fraction of each distinct tumour is normalized to the expression value of that particular gene from the NSP fraction. The NSP normalized matrix is provided as a supplementary file on the Series record.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Qingxia,,Wei
| | Sample_contact_email | wqingxia@hotmail.com
| | Sample_contact_phone | 416-813-7231
| | Sample_contact_laboratory | Alman Lab
| | Sample_contact_department | Development Biology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 101 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595278/suppl/GSM595278.CEL.gz
| | Sample_series_id | GSE24199
| | Sample_data_row_count | 54675
| | |
|
GSM595279 | GPL570 |
|
Side population, biological rep 3
|
SP 265
|
tissue: soft-tissue sarcoma
cell type: Side population cells
|
|
| Sample_geo_accession | GSM595279
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The tumours were stained with Hoeschst Dye, and sorted via flow-cytomentry
| | Sample_growth_protocol_ch1 | The tumours were freshly harvested from human.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagene extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, GeneChips were washed and stained using EukGE-WS2v4
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The .cel files where imported into Genespring GX11 program and summarized using RMA normalization. The expression value of each gene from the SP and NSP fraction of each distinct tumour is normalized to the expression value of that particular gene from the NSP fraction. The NSP normalized matrix is provided as a supplementary file on the Series record.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Qingxia,,Wei
| | Sample_contact_email | wqingxia@hotmail.com
| | Sample_contact_phone | 416-813-7231
| | Sample_contact_laboratory | Alman Lab
| | Sample_contact_department | Development Biology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 101 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595279/suppl/GSM595279.CEL.gz
| | Sample_series_id | GSE24199
| | Sample_data_row_count | 54675
| | |
|
GSM595280 | GPL570 |
|
Non-side population, biological rep 3
|
NSP 265
|
tissue: soft-tissue sarcoma
cell type: Non-side population cells
|
|
| Sample_geo_accession | GSM595280
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The tumours were stained with Hoeschst Dye, and sorted via flow-cytomentry
| | Sample_growth_protocol_ch1 | The tumours were freshly harvested from human.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagene extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, GeneChips were washed and stained using EukGE-WS2v4
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The .cel files where imported into Genespring GX11 program and summarized using RMA normalization. The expression value of each gene from the SP and NSP fraction of each distinct tumour is normalized to the expression value of that particular gene from the NSP fraction. The NSP normalized matrix is provided as a supplementary file on the Series record.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Qingxia,,Wei
| | Sample_contact_email | wqingxia@hotmail.com
| | Sample_contact_phone | 416-813-7231
| | Sample_contact_laboratory | Alman Lab
| | Sample_contact_department | Development Biology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 101 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595280/suppl/GSM595280.CEL.gz
| | Sample_series_id | GSE24199
| | Sample_data_row_count | 54675
| | |
|
GSM595281 | GPL570 |
|
Side population, biological rep 4
|
SP 864
|
tissue: soft-tissue sarcoma
cell type: Side population cells
|
|
| Sample_geo_accession | GSM595281
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The tumours were stained with Hoeschst Dye, and sorted via flow-cytomentry
| | Sample_growth_protocol_ch1 | The tumours were freshly harvested from human.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagene extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, GeneChips were washed and stained using EukGE-WS2v4
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The .cel files where imported into Genespring GX11 program and summarized using RMA normalization. The expression value of each gene from the SP and NSP fraction of each distinct tumour is normalized to the expression value of that particular gene from the NSP fraction. The NSP normalized matrix is provided as a supplementary file on the Series record.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Qingxia,,Wei
| | Sample_contact_email | wqingxia@hotmail.com
| | Sample_contact_phone | 416-813-7231
| | Sample_contact_laboratory | Alman Lab
| | Sample_contact_department | Development Biology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 101 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595281/suppl/GSM595281.CEL.gz
| | Sample_series_id | GSE24199
| | Sample_data_row_count | 54675
| | |
|
GSM595282 | GPL570 |
|
Non-side population, biological rep 4
|
NSP 864
|
tissue: soft-tissue sarcoma
cell type: Non-side population cells
|
|
| Sample_geo_accession | GSM595282
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The tumours were stained with Hoeschst Dye, and sorted via flow-cytomentry
| | Sample_growth_protocol_ch1 | The tumours were freshly harvested from human.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagene extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, GeneChips were washed and stained using EukGE-WS2v4
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The .cel files where imported into Genespring GX11 program and summarized using RMA normalization. The expression value of each gene from the SP and NSP fraction of each distinct tumour is normalized to the expression value of that particular gene from the NSP fraction. The NSP normalized matrix is provided as a supplementary file on the Series record.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Qingxia,,Wei
| | Sample_contact_email | wqingxia@hotmail.com
| | Sample_contact_phone | 416-813-7231
| | Sample_contact_laboratory | Alman Lab
| | Sample_contact_department | Development Biology
| | Sample_contact_institute | Hospital for Sick Children
| | Sample_contact_address | 101 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | M5G 1L7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595282/suppl/GSM595282.CEL.gz
| | Sample_series_id | GSE24199
| | Sample_data_row_count | 54675
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