Search results for the GEO ID: GSE24202  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM595326 | GPL3921 |
|
HMLE, pWZL, rep1
|
HMLE breast epithelial cells transduced with pWZL
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon paclitaxel treatment
|
| Sample_geo_accession | GSM595326
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595326/suppl/GSM595326.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595327 | GPL3921 |
|
HMLE, pWZL, rep2
|
HMLE breast epithelial cells transduced with pWZL
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon paclitaxel treatment
|
| Sample_geo_accession | GSM595327
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595327/suppl/GSM595327.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595328 | GPL3921 |
|
HMLE, pWZL, rep3
|
HMLE breast epithelial cells transduced with pWZL
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon paclitaxel treatment
|
| Sample_geo_accession | GSM595328
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595328/suppl/GSM595328.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595329 | GPL3921 |
|
HMLE, TGFb, rep1
|
HMLE breast epithelial cells transduced with TGFb
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595329
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595329/suppl/GSM595329.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595330 | GPL3921 |
|
HMLE, TGFb, rep2
|
HMLE breast epithelial cells transduced with TGFb
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595330
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595330/suppl/GSM595330.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595331 | GPL3921 |
|
HMLE, TGFb, rep3
|
HMLE breast epithelial cells transduced with TGFb
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595331
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595331/suppl/GSM595331.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595332 | GPL3921 |
|
HMLE, Twist, rep1
|
HMLE breast epithelial cells transduced with Twist
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595332
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595332/suppl/GSM595332.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595333 | GPL3921 |
|
HMLE, Twist, rep2
|
HMLE breast epithelial cells transduced with Twist
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595333
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595333/suppl/GSM595333.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595334 | GPL3921 |
|
HMLE, Twist, rep3
|
HMLE breast epithelial cells transduced with Twist
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595334
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595334/suppl/GSM595334.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595335 | GPL3921 |
|
HMLE, Gsc, rep1
|
HMLE breast epithelial cells transduced with Gsc
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595335
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595335/suppl/GSM595335.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595336 | GPL3921 |
|
HMLE, Gsc, rep2
|
HMLE breast epithelial cells transduced with Gsc
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595336
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595336/suppl/GSM595336.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595337 | GPL3921 |
|
HMLE, Gsc, rep3
|
HMLE breast epithelial cells transduced with Gsc
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595337
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595337/suppl/GSM595337.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595338 | GPL3921 |
|
HMLE, Snail, rep1
|
HMLE breast epithelial cells transduced with Snail
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595338
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595338/suppl/GSM595338.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595339 | GPL3921 |
|
HMLE, Snail, rep2
|
HMLE breast epithelial cells transduced with Snail
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595339
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595339/suppl/GSM595339.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595340 | GPL3921 |
|
HMLE, Snail, rep3
|
HMLE breast epithelial cells transduced with Snail
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595340
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595340/suppl/GSM595340.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595341 | GPL3921 |
|
HMLE, shGFP, rep1
|
HMLE breast epithelial cells transduced with shGFP
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595341
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595341/suppl/GSM595341.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595342 | GPL3921 |
|
HMLE, shGFP rep2
|
HMLE breast epithelial cells transduced with shGFP
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595342
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595342/suppl/GSM595342.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595343 | GPL3921 |
|
HMLE, shGFP rep3
|
HMLE breast epithelial cells transduced with shGFP
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595343
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595343/suppl/GSM595343.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595344 | GPL3921 |
|
HMLE, shEcad, rep1
|
HMLE breast epithelial cells transduced with shEcad
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595344
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595344/suppl/GSM595344.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595345 | GPL3921 |
|
HMLE, shEcad, rep2
|
HMLE breast epithelial cells transduced with shEcad
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595345
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595345/suppl/GSM595345.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
GSM595346 | GPL3921 |
|
HMLE, shEcad, rep3
|
HMLE breast epithelial cells transduced with shEcad
|
cell type: HMLE
tissue: breast
genotype: SV40ER, hTERT
|
Global gene expression signature upon salinomycin treatment
|
| Sample_geo_accession | GSM595346
| | Sample_status | Public on Sep 20 2010
| | Sample_submission_date | Sep 17 2010
| | Sample_last_update_date | Sep 20 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Following retroviral transduction, cells were treated for 5 days with blasticidin (5ng/ml); after drug selection, cells were grown for at least one week prior to RNA extraction.
| | Sample_growth_protocol_ch1 | Cells were grown in a 1:1 mixture of DMEM+10%FBS, insulin, hydrocortisone and MEGM.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from culture plates for each cell type using an RNeasy Mini kit coupled with an RNase-free DNase set (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol; hybridization was performed with high-throughput HT_HG-U133A arrays in 96-well format
| | Sample_scan_protocol | Scanned using an Affymetrix HT Scanner
| | Sample_data_processing | The data were RMA-normalized using the open-source R-project statistical software with bioconductor packages.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Piyush,B.,Gupta
| | Sample_contact_email | pgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0086
| | Sample_contact_institute | Whitehead Institute for Biomedical Research/MIT
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595346/suppl/GSM595346.CEL.gz
| | Sample_series_id | GSE24202
| | Sample_data_row_count | 16383
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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