Search results for the GEO ID: GSE24206 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM595407 | GPL570 |
|
Healthy donor_biological replicate1
|
Whole lung tissue_healthy donor lung
|
tissue: lung
lung source: routine lung volume reduction
phenotype: healthy
gender: unknown
age: unknown
|
Normal_A
|
Sample_geo_accession | GSM595407
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595407/suppl/GSM595407.CEL.gz
| Sample_relation | Reanalysis of: GSM252104
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595411 | GPL570 |
|
Healthy donor_biological replicate2
|
Whole lung tissue_healthy donor lung
|
tissue: lung
lung source: routine lung volume reduction
phenotype: healthy
gender: unknown
age: unknown
|
Normal_B
|
Sample_geo_accession | GSM595411
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595411/suppl/GSM595411.CEL.gz
| Sample_relation | Reanalysis of: GSM252108
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595414 | GPL570 |
|
Healthy donor_biological replicate3
|
Whole lung tissue_healthy donor lung
|
tissue: lung
lung source: routine lung volume reduction
phenotype: healthy
gender: unknown
age: unknown
|
Normal_C
|
Sample_geo_accession | GSM595414
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595414/suppl/GSM595414.CEL.gz
| Sample_relation | Reanalysis of: GSM252111
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595416 | GPL570 |
|
Healthy donor_biological replicate4
|
Whole lung tissue_healthy donor lung
|
tissue: lung
lung source: routine lung volume reduction
phenotype: healthy
gender: unknown
age: unknown
|
Normal_D
|
Sample_geo_accession | GSM595416
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595416/suppl/GSM595416.CEL.gz
| Sample_relation | Reanalysis of: GSM252113
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595417 | GPL570 |
|
Healthy donor_biological replicate5
|
Whole lung tissue_healthy donor lung
|
tissue: lung
lung source: routine lung volume reduction
phenotype: healthy
gender: unknown
age: unknown
|
Normal_E
|
Sample_geo_accession | GSM595417
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595417/suppl/GSM595417.CEL.gz
| Sample_relation | Reanalysis of: GSM252114
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595419 | GPL570 |
|
Healthy donor_biological replicate6
|
Whole lung tissue_healthy donor lung
|
tissue: lung
lung source: routine lung volume reduction
phenotype: healthy
gender: unknown
age: unknown
|
Normal_F
|
Sample_geo_accession | GSM595419
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595419/suppl/GSM595419.CEL.gz
| Sample_relation | Reanalysis of: GSM252116
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595421 | GPL570 |
|
Early IPF_surgical biopsy_upper lobe_rep140
|
Whole lung tissue_early IPF_biopsy
|
tissue: lung, upper lobe
lung source: surgical biopsy
phenotype: early idiopathic pulmonary fibrosis (IPF)
gender: male
age: 58
|
Biopsy_140U
|
Sample_geo_accession | GSM595421
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595421/suppl/GSM595421.CEL.gz
| Sample_relation | Reanalysis of: GSM252118
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595422 | GPL570 |
|
Early IPF_surgical biopsy_upper lobe_rep142
|
Whole lung tissue_early IPF_biopsy
|
tissue: lung, upper lobe
lung source: surgical biopsy
phenotype: early idiopathic pulmonary fibrosis (IPF)
gender: female
age: 56
|
Biopsy_142U
|
Sample_geo_accession | GSM595422
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595422/suppl/GSM595422.CEL.gz
| Sample_relation | Reanalysis of: GSM252119
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595423 | GPL570 |
|
Early IPF_surgical biopsy_upper lobe_rep144
|
Whole lung tissue_early IPF_biopsy
|
tissue: lung, upper lobe
lung source: surgical biopsy
phenotype: early idiopathic pulmonary fibrosis (IPF)
gender: male
age: 70
|
Biopsy_144U
|
Sample_geo_accession | GSM595423
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595423/suppl/GSM595423.CEL.gz
| Sample_relation | Reanalysis of: GSM252120
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595424 | GPL570 |
|
Early IPF_surgical biopsy_upper lobe_rep145
|
Whole lung tissue_early IPF_biopsy
|
tissue: lung, upper lobe
lung source: surgical biopsy
phenotype: early idiopathic pulmonary fibrosis (IPF)
gender: male
age: 54
|
Biopsy_145U
|
Sample_geo_accession | GSM595424
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595424/suppl/GSM595424.CEL.gz
| Sample_relation | Reanalysis of: GSM252121
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595425 | GPL570 |
|
Advanced IPF_explant_lower lobe_rep146
|
Whole lung tissue_advanced IPF_explant
|
tissue: lung, lower lobe
lung source: explant
phenotype: advanced idiopathic pulmonary fibrosis (IPF)
gender: male
age: 64
|
Explant_146L
|
Sample_geo_accession | GSM595425
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595425/suppl/GSM595425.CEL.gz
| Sample_relation | Reanalysis of: GSM252125
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595426 | GPL570 |
|
Early IPF_surgical biopsy_upper lobe_rep149
|
Whole lung tissue_early IPF_biopsy
|
tissue: lung, upper lobe
lung source: surgical biopsy
phenotype: early idiopathic pulmonary fibrosis (IPF)
gender: male
age: 58
|
Biopsy_149U
|
Sample_geo_accession | GSM595426
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595426/suppl/GSM595426.CEL.gz
| Sample_relation | Reanalysis of: GSM252126
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595427 | GPL570 |
|
Early IPF_surgical biopsy_lower lobe_rep149
|
Whole lung tissue_early IPF_biopsy
|
tissue: lung, lower lobe
lung source: surgical biopsy
phenotype: early idiopathic pulmonary fibrosis (IPF)
gender: male
age: 58
|
Biopsy_149L
|
Sample_geo_accession | GSM595427
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595427/suppl/GSM595427.CEL.gz
| Sample_relation | Reanalysis of: GSM252127
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595428 | GPL570 |
|
Advanced IPF_explant_upper lobe_rep152
|
Whole lung tissue_advanced IPF_explant
|
tissue: lung, upper lobe
lung source: explant
phenotype: advanced idiopathic pulmonary fibrosis (IPF)
gender: male
age: 67
|
Explant_152U
|
Sample_geo_accession | GSM595428
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595428/suppl/GSM595428.CEL.gz
| Sample_relation | Reanalysis of: GSM252128
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595429 | GPL570 |
|
Advanced IPF_explant_lower lobe_rep152
|
Whole lung tissue_advanced IPF_explant
|
tissue: lung, lower lobe
lung source: explant
phenotype: advanced idiopathic pulmonary fibrosis (IPF)
gender: male
age: 67
|
Explant_152L
|
Sample_geo_accession | GSM595429
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595429/suppl/GSM595429.CEL.gz
| Sample_relation | Reanalysis of: GSM252129
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595432 | GPL570 |
|
Advanced IPF_explant_upper lobe_rep157
|
Whole lung tissue_advanced IPF_explant
|
tissue: lung, upper lobe
lung source: explant
phenotype: advanced idiopathic pulmonary fibrosis (IPF)
gender: male
age: 67
|
Explant_157U
|
Sample_geo_accession | GSM595432
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595432/suppl/GSM595432.CEL.gz
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595434 | GPL570 |
|
Advanced IPF_explant_lower lobe_rep157
|
Whole lung tissue_advanced IPF_explant
|
tissue: lung, lower lobe
lung source: explant
phenotype: advanced idiopathic pulmonary fibrosis (IPF)
gender: male
age: 67
|
Explant_157L
|
Sample_geo_accession | GSM595434
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595434/suppl/GSM595434.CEL.gz
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595435 | GPL570 |
|
Advanced IPF_explant_upper lobe_rep158
|
Whole lung tissue_advanced IPF_explant
|
tissue: lung, upper lobe
lung source: explant
phenotype: advanced idiopathic pulmonary fibrosis (IPF)
gender: female
age: 68
|
Explant_158U
|
Sample_geo_accession | GSM595435
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595435/suppl/GSM595435.CEL.gz
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595437 | GPL570 |
|
Advanced IPF_explant_lower lobe_rep158
|
Whole lung tissue_advanced IPF_explant
|
tissue: lung, lower lobe
lung source: explant
phenotype: advanced idiopathic pulmonary fibrosis (IPF)
gender: female
age: 68
|
Explant_158L
|
Sample_geo_accession | GSM595437
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595437/suppl/GSM595437.CEL.gz
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595439 | GPL570 |
|
Early IPF_surgical biopsy_upper lobe_rep159
|
Whole lung tissue_early IPF_biopsy
|
tissue: lung, upper lobe
lung source: surgical biopsy
phenotype: early idiopathic pulmonary fibrosis (IPF)
gender: male
age: 68
|
Biopsy_159U
|
Sample_geo_accession | GSM595439
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595439/suppl/GSM595439.CEL.gz
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595441 | GPL570 |
|
Early IPF_surgical biopsy_lower lobe_rep159
|
Whole lung tissue_early IPF_biopsy
|
tissue: lung, lower lobe
lung source: surgical biopsy
phenotype: early idiopathic pulmonary fibrosis (IPF)
gender: male
age: 68
|
Biopsy_159L
|
Sample_geo_accession | GSM595441
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595441/suppl/GSM595441.CEL.gz
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595443 | GPL570 |
|
Advanced IPF_explant_upper lobe_rep160
|
Whole lung tissue_advanced IPF_explant
|
tissue: lung, upper lobe
lung source: explant
phenotype: advanced idiopathic pulmonary fibrosis (IPF)
gender: female
age: 67
|
Explant_160U
|
Sample_geo_accession | GSM595443
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595443/suppl/GSM595443.CEL.gz
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
GSM595445 | GPL570 |
|
Advanced IPF_explant_lower lobe_rep160
|
Whole lung tissue_advanced IPF_explant
|
tissue: lung, lower lobe
lung source: explant
phenotype: advanced idiopathic pulmonary fibrosis (IPF)
gender: female
age: 67
|
Explant_160L
|
Sample_geo_accession | GSM595445
| Sample_status | Public on Nov 01 2011
| Sample_submission_date | Sep 17 2010
| Sample_last_update_date | Nov 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction of total RNA was performed with RNAqueous-4PCR kits (Ambion, Inc., Austin, TX) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA ( Affymetrix Technical Manual).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Array Scanner (7G).
| Sample_data_processing | All pre-processing and data analyses were performed using R version 2.9 and the Bioconductor packages designed for use with Affymetrix microarray data.
| Sample_platform_id | GPL570
| Sample_contact_name | Eric,B.,Meltzer
| Sample_contact_email | eric.meltzer@duke.edu
| Sample_contact_phone | 919-681-5961
| Sample_contact_fax | 919-681-4637
| Sample_contact_department | Department of Medicine, Division of Pulmonary, Allergy and Critical Care
| Sample_contact_institute | Duke University
| Sample_contact_address | DUMC 102355
| Sample_contact_city | Durham
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27710
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM595nnn/GSM595445/suppl/GSM595445.CEL.gz
| Sample_series_id | GSE24206
| Sample_data_row_count | 54613
| |
|
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Make groups for comparisons |
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Select GSMs and click on "Add groups" |
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