Search results for the GEO ID: GSE2421 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM45580 | GPL339 |
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0-KO
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BMDM, not treated, KO Vdr -/-
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Vdr tm1 Rge knockout mice; Bone marrow derived macrophages (BMDMs); Briefly, femora and tibia of the hind legs were flushed with cold DMEM (Invitrogen) containing 10 % heat-inactivated fetal calf serum (Biowest), 200 mM L-glutamine, and penicillin/streptomycin (Invitrogen). This complete medium was supplemented with M-CSF (50 ng/ml) and bone marrow cells were cultured at 37°C in a humidified 5% CO2 atmosphere for 7 days. Thioglycolate-elicited macrophages were obtained 4 days after the intraperitoneal injection of sterile 4 % thioglycolate medium. Cells were harvested by peritoneal lavage with cold PBS, 1% FCS and were cultured in RPMI 1640 (Invitrogen) including 10 % heat-inactivated fetal calf serum, L-glutamine, and penicillin/streptomycin (P/S).
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Sample_geo_accession | GSM45580
| Sample_status | Public on Apr 21 2005
| Sample_submission_date | Mar 21 2005
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL339
| Sample_contact_name | Robert,,Geffers
| Sample_contact_email | robert.geffers@helmholtz-hzi.de
| Sample_contact_phone | +49 531-6181-3058
| Sample_contact_laboratory | Array Facility
| Sample_contact_department | Dep. Cell Biology
| Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| Sample_contact_address | Inhoffenstr. 7
| Sample_contact_city | Braunschweig
| Sample_contact_zip/postal_code | 38124
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45580/suppl/GSM45580.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45580/suppl/GSM45580.CHP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45580/suppl/GSM45580.RPT.gz
| Sample_series_id | GSE2421
| Sample_data_row_count | 22690
| |
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GSM45581 | GPL339 |
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0-WT
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wild type; BMDM; not treated
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wild type mice; Bone marrow derived macrophages (BMDMs); Briefly, femora and tibia of the hind legs were flushed with cold DMEM (Invitrogen) containing 10 % heat-inactivated fetal calf serum (Biowest), 200 mM L-glutamine, and penicillin/streptomycin (Invitrogen). This complete medium was supplemented with M-CSF (50 ng/ml) and bone marrow cells were cultured at 37°C in a humidified 5% CO2 atmosphere for 7 days. Thioglycolate-elicited macrophages were obtained 4 days after the intraperitoneal injection of sterile 4 % thioglycolate medium. Cells were harvested by peritoneal lavage with cold PBS, 1% FCS and were cultured in RPMI 1640 (Invitrogen) including 10 % heat-inactivated fetal calf serum, L-glutamine, and penicillin/streptomycin (P/S).
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Sample_geo_accession | GSM45581
| Sample_status | Public on Apr 21 2005
| Sample_submission_date | Mar 21 2005
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL339
| Sample_contact_name | Robert,,Geffers
| Sample_contact_email | robert.geffers@helmholtz-hzi.de
| Sample_contact_phone | +49 531-6181-3058
| Sample_contact_laboratory | Array Facility
| Sample_contact_department | Dep. Cell Biology
| Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| Sample_contact_address | Inhoffenstr. 7
| Sample_contact_city | Braunschweig
| Sample_contact_zip/postal_code | 38124
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45581/suppl/GSM45581.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45581/suppl/GSM45581.CHP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45581/suppl/GSM45581.RPT.gz
| Sample_series_id | GSE2421
| Sample_data_row_count | 22690
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GSM45582 | GPL339 |
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Vit-WT
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wild type; BMDM; 1alpha,25(OH)2D3 treated
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wild type mice; Bone marrow derived macrophages (BMDMs); Briefly, femora and tibia of the hind legs were flushed with cold DMEM (Invitrogen) containing 10 % heat-inactivated fetal calf serum (Biowest), 200 mM L-glutamine, and penicillin/streptomycin (Invitrogen). This complete medium was supplemented with M-CSF (50 ng/ml) and bone marrow cells were cultured at 37°C in a humidified 5% CO2 atmosphere for 7 days. Thioglycolate-elicited macrophages were obtained 4 days after the intraperitoneal injection of sterile 4 % thioglycolate medium. Cells were harvested by peritoneal lavage with cold PBS, 1% FCS and were cultured in RPMI 1640 (Invitrogen) including 10 % heat-inactivated fetal calf serum, L-glutamine, and penicillin/streptomycin (P/S).
Macrophages were plated at 8 x 10^4/well in 96-well plates and cultured in P/S-free medium in the presence or absence of IFN-gamma, 1alpha,25(OH)2D3, or both for 24-48 hours
|
Sample_geo_accession | GSM45582
| Sample_status | Public on Apr 21 2005
| Sample_submission_date | Mar 21 2005
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL339
| Sample_contact_name | Robert,,Geffers
| Sample_contact_email | robert.geffers@helmholtz-hzi.de
| Sample_contact_phone | +49 531-6181-3058
| Sample_contact_laboratory | Array Facility
| Sample_contact_department | Dep. Cell Biology
| Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| Sample_contact_address | Inhoffenstr. 7
| Sample_contact_city | Braunschweig
| Sample_contact_zip/postal_code | 38124
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45582/suppl/GSM45582.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45582/suppl/GSM45582.CHP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45582/suppl/GSM45582.RPT.gz
| Sample_series_id | GSE2421
| Sample_data_row_count | 22690
| |
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GSM45583 | GPL339 |
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Vit-KO
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BMDM, 1alpha,25(OH)2D3 treated, KO Vdr -/-
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KO Vdr -/- mice; Bone marrow derived macrophages (BMDMs); Briefly, femora and tibia of the hind legs were flushed with cold DMEM (Invitrogen) containing 10 % heat-inactivated fetal calf serum (Biowest), 200 mM L-glutamine, and penicillin/streptomycin (Invitrogen). This complete medium was supplemented with M-CSF (50 ng/ml) and bone marrow cells were cultured at 37°C in a humidified 5% CO2 atmosphere for 7 days. Thioglycolate-elicited macrophages were obtained 4 days after the intraperitoneal injection of sterile 4 % thioglycolate medium. Cells were harvested by peritoneal lavage with cold PBS, 1% FCS and were cultured in RPMI 1640 (Invitrogen) including 10 % heat-inactivated fetal calf serum, L-glutamine, and penicillin/streptomycin (P/S). Macrophages were plated at 8 x 104/well in 96-well plates and cultured in P/S-free medium in the presence or absence of IFN-gamma, 1alpha,25(OH)2D3, or both for 24-48 hours.
|
Sample_geo_accession | GSM45583
| Sample_status | Public on Apr 21 2005
| Sample_submission_date | Mar 21 2005
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL339
| Sample_contact_name | Robert,,Geffers
| Sample_contact_email | robert.geffers@helmholtz-hzi.de
| Sample_contact_phone | +49 531-6181-3058
| Sample_contact_laboratory | Array Facility
| Sample_contact_department | Dep. Cell Biology
| Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| Sample_contact_address | Inhoffenstr. 7
| Sample_contact_city | Braunschweig
| Sample_contact_zip/postal_code | 38124
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45583/suppl/GSM45583.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45583/suppl/GSM45583.CHP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45583/suppl/GSM45583.RPT.gz
| Sample_series_id | GSE2421
| Sample_data_row_count | 22690
| |
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GSM45584 | GPL339 |
|
IFN-WT
|
wild type; BMDM; IFNgamma treated
|
|
wild type mice; Bone marrow derived macrophages (BMDMs); Briefly, femora and tibia of the hind legs were flushed with cold DMEM (Invitrogen) containing 10 % heat-inactivated fetal calf serum (Biowest), 200 mM L-glutamine, and penicillin/streptomycin (Invitrogen). This complete medium was supplemented with M-CSF (50 ng/ml) and bone marrow cells were cultured at 37°C in a humidified 5% CO2 atmosphere for 7 days. Thioglycolate-elicited macrophages were obtained 4 days after the intraperitoneal injection of sterile 4 % thioglycolate medium. Cells were harvested by peritoneal lavage with cold PBS, 1% FCS and were cultured in RPMI 1640 (Invitrogen) including 10 % heat-inactivated fetal calf serum, L-glutamine, and penicillin/streptomycin (P/S). Macrophages were plated at 8 x 104/well in 96-well plates and cultured in P/S-free medium in the presence or absence of IFN-gamma, 1alpha,25(OH)2D3, or both for 24-48 hours.
|
Sample_geo_accession | GSM45584
| Sample_status | Public on Apr 21 2005
| Sample_submission_date | Mar 21 2005
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL339
| Sample_contact_name | Robert,,Geffers
| Sample_contact_email | robert.geffers@helmholtz-hzi.de
| Sample_contact_phone | +49 531-6181-3058
| Sample_contact_laboratory | Array Facility
| Sample_contact_department | Dep. Cell Biology
| Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| Sample_contact_address | Inhoffenstr. 7
| Sample_contact_city | Braunschweig
| Sample_contact_zip/postal_code | 38124
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45584/suppl/GSM45584.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45584/suppl/GSM45584.CHP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45584/suppl/GSM45584.RPT.gz
| Sample_series_id | GSE2421
| Sample_data_row_count | 22690
| |
|
GSM45585 | GPL339 |
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IFN-KO
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BMDM, IFNgamma treated, KO Vdr -/-
|
|
KO Vdr -/- mice; Bone marrow derived macrophages (BMDMs); Briefly, femora and tibia of the hind legs were flushed with cold DMEM (Invitrogen) containing 10 % heat-inactivated fetal calf serum (Biowest), 200 mM L-glutamine, and penicillin/streptomycin (Invitrogen). This complete medium was supplemented with M-CSF (50 ng/ml) and bone marrow cells were cultured at 37°C in a humidified 5% CO2 atmosphere for 7 days. Thioglycolate-elicited macrophages were obtained 4 days after the intraperitoneal injection of sterile 4 % thioglycolate medium. Cells were harvested by peritoneal lavage with cold PBS, 1% FCS and were cultured in RPMI 1640 (Invitrogen) including 10 % heat-inactivated fetal calf serum, L-glutamine, and penicillin/streptomycin (P/S). Macrophages were plated at 8 x 104/well in 96-well plates and cultured in P/S-free medium in the presence or absence of IFN-gamma, 1alpha,25(OH)2D3, or both for 24-48 hours.
|
Sample_geo_accession | GSM45585
| Sample_status | Public on Apr 21 2005
| Sample_submission_date | Mar 21 2005
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL339
| Sample_contact_name | Robert,,Geffers
| Sample_contact_email | robert.geffers@helmholtz-hzi.de
| Sample_contact_phone | +49 531-6181-3058
| Sample_contact_laboratory | Array Facility
| Sample_contact_department | Dep. Cell Biology
| Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| Sample_contact_address | Inhoffenstr. 7
| Sample_contact_city | Braunschweig
| Sample_contact_zip/postal_code | 38124
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45585/suppl/GSM45585.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45585/suppl/GSM45585.CHP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45585/suppl/GSM45585.RPT.gz
| Sample_series_id | GSE2421
| Sample_data_row_count | 22690
| |
|
GSM45586 | GPL339 |
|
IFN/Vit-WT
|
wild type; BMDM; IFNgamma and 1alpha,25(OH)2D3 treated
|
|
wild type mice; Bone marrow derived macrophages (BMDMs); Briefly, femora and tibia of the hind legs were flushed with cold DMEM (Invitrogen) containing 10 % heat-inactivated fetal calf serum (Biowest), 200 mM L-glutamine, and penicillin/streptomycin (Invitrogen). This complete medium was supplemented with M-CSF (50 ng/ml) and bone marrow cells were cultured at 37°C in a humidified 5% CO2 atmosphere for 7 days. Thioglycolate-elicited macrophages were obtained 4 days after the intraperitoneal injection of sterile 4 % thioglycolate medium. Cells were harvested by peritoneal lavage with cold PBS, 1% FCS and were cultured in RPMI 1640 (Invitrogen) including 10 % heat-inactivated fetal calf serum, L-glutamine, and penicillin/streptomycin (P/S). Macrophages were plated at 8 x 104/well in 96-well plates and cultured in P/S-free medium in the presence or absence of IFN-gamma, 1alpha,25(OH)2D3, or both for 24-48 hours.
|
Sample_geo_accession | GSM45586
| Sample_status | Public on Apr 21 2005
| Sample_submission_date | Mar 21 2005
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL339
| Sample_contact_name | Robert,,Geffers
| Sample_contact_email | robert.geffers@helmholtz-hzi.de
| Sample_contact_phone | +49 531-6181-3058
| Sample_contact_laboratory | Array Facility
| Sample_contact_department | Dep. Cell Biology
| Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| Sample_contact_address | Inhoffenstr. 7
| Sample_contact_city | Braunschweig
| Sample_contact_zip/postal_code | 38124
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45586/suppl/GSM45586.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45586/suppl/GSM45586.CHP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45586/suppl/GSM45586.RPT.gz
| Sample_series_id | GSE2421
| Sample_data_row_count | 22690
| |
|
GSM45587 | GPL339 |
|
IFN/Vit-KO
|
BMDM, 1alpha,25(OH)2D3 and IFNgamma treated, KO Vdr -/-
|
|
KO Vdr -/- mice; Bone marrow derived macrophages (BMDMs); Briefly, femora and tibia of the hind legs were flushed with cold DMEM (Invitrogen) containing 10 % heat-inactivated fetal calf serum (Biowest), 200 mM L-glutamine, and penicillin/streptomycin (Invitrogen). This complete medium was supplemented with M-CSF (50 ng/ml) and bone marrow cells were cultured at 37°C in a humidified 5% CO2 atmosphere for 7 days. Thioglycolate-elicited macrophages were obtained 4 days after the intraperitoneal injection of sterile 4 % thioglycolate medium. Cells were harvested by peritoneal lavage with cold PBS, 1% FCS and were cultured in RPMI 1640 (Invitrogen) including 10 % heat-inactivated fetal calf serum, L-glutamine, and penicillin/streptomycin (P/S). Macrophages were plated at 8 x 104/well in 96-well plates and cultured in P/S-free medium in the presence or absence of IFN-gamma, 1alpha,25(OH)2D3, or both for 24-48 hours.
|
Sample_geo_accession | GSM45587
| Sample_status | Public on Apr 21 2005
| Sample_submission_date | Mar 21 2005
| Sample_last_update_date | Oct 28 2005
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL339
| Sample_contact_name | Robert,,Geffers
| Sample_contact_email | robert.geffers@helmholtz-hzi.de
| Sample_contact_phone | +49 531-6181-3058
| Sample_contact_laboratory | Array Facility
| Sample_contact_department | Dep. Cell Biology
| Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| Sample_contact_address | Inhoffenstr. 7
| Sample_contact_city | Braunschweig
| Sample_contact_zip/postal_code | 38124
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45587/suppl/GSM45587.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45587/suppl/GSM45587.CHP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM45nnn/GSM45587/suppl/GSM45587.RPT.gz
| Sample_series_id | GSE2421
| Sample_data_row_count | 22690
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