Search results for the GEO ID: GSE24259  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM596624 | GPL570 |
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A375SM PAR-1 shRNA
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A375SM metastatic melanoma cell transduced with PAR-1 shRNA
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cell line: A375SM
cell type: metastatic melanoma cells
shRNA: PAR-1
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Gene expression data from PAR-1 shRNA-transduced metastatic melanoma A375SM cell line.
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| Sample_geo_accession | GSM596624
| | Sample_status | Public on Sep 22 2010
| | Sample_submission_date | Sep 21 2010
| | Sample_last_update_date | Sep 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from cells using the RNAqueous kit from Ambion following the manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylation of cRNAs were performed by Codon Biosciences (now SeqWright) using 10ug of total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Fragmented cRNAs were hybridized to Affymetrix Human Genome Array U133 Plus 2.0 array chips for 16 hours at 45C. The chips were washed and stained using an Affymetrix microfluidic station by Codon Biosciences.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 3000 by Codon Biosciences.
| | Sample_data_processing | Data were analyzed by Codon Biosciences (now SeqWright) using GeneSpring software version 7.3.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gabriel,J,Villares
| | Sample_contact_institute | University of Texas, MD Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM596nnn/GSM596624/suppl/GSM596624.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM596nnn/GSM596624/suppl/GSM596624.CHP.gz
| | Sample_series_id | GSE24259
| | Sample_data_row_count | 54675
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GSM596625 | GPL570 |
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A375SM NT shRNA
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A375SM metastatic melanoma cell transduced with NT shRNA
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cell line: A375SM
cell type: metastatic melanoma cells
shRNA: non-targeting control
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Gene expression data from NT shRNA-transduced metastatic melanoma A375SM cell line.
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| Sample_geo_accession | GSM596625
| | Sample_status | Public on Sep 22 2010
| | Sample_submission_date | Sep 21 2010
| | Sample_last_update_date | Sep 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from cells using the RNAqueous kit from Ambion following the manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylation of cRNAs were performed by Codon Biosciences (now SeqWright) using 10ug of total RNA according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Fragmented cRNAs were hybridized to Affymetrix Human Genome Array U133 Plus 2.0 array chips for 16 hours at 45C. The chips were washed and stained using an Affymetrix microfluidic station by Codon Biosciences.
| | Sample_scan_protocol | Chips were scanned with an Affymetrix GeneChip Scanner 3000 by Codon Biosciences.
| | Sample_data_processing | Data were analyzed by Codon Biosciences (now SeqWright) using GeneSpring software version 7.3.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Gabriel,J,Villares
| | Sample_contact_institute | University of Texas, MD Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM596nnn/GSM596625/suppl/GSM596625.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM596nnn/GSM596625/suppl/GSM596625.CHP.gz
| | Sample_series_id | GSE24259
| | Sample_data_row_count | 54675
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