Search results for the GEO ID: GSE24337  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM599910 | GPL570 |
|
large airway [DGM-00041]
|
large airway
|
department of genetic medicine id: DGM-00041
airway region: large airway
cell type: mixture of epithelium, basal, ciliated, secretory, undifferentiated and inflammatory cells
time: n/a
|
DGM-00041_lg.CHP
DGM-00041_lg.CEL
|
| Sample_geo_accession | GSM599910
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599910/suppl/GSM599910.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599910/suppl/GSM599910.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599911 | GPL570 |
|
large airway [DGM-00044]
|
large airway
|
department of genetic medicine id: DGM-00044
airway region: large airway
cell type: mixture of epithelium, basal, ciliated, secretory, undifferentiated and inflammatory cells
time: n/a
|
DGM-00044_lg.CHP
DGM-00044_lg.CEL
|
| Sample_geo_accession | GSM599911
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599911/suppl/GSM599911.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599911/suppl/GSM599911.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599912 | GPL570 |
|
large airway [DGM-00052]
|
large airway
|
department of genetic medicine id: DGM-00052
airway region: large airway
cell type: mixture of epithelium, basal, ciliated, secretory, undifferentiated and inflammatory cells
time: n/a
|
DGM-00052_lg.CHP
DGM-00052_lg.CEL
|
| Sample_geo_accession | GSM599912
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599912/suppl/GSM599912.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599912/suppl/GSM599912.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599913 | GPL570 |
|
large airway [DGM-00073]
|
large airway
|
department of genetic medicine id: DGM-00073
airway region: large airway
cell type: mixture of epithelium, basal, ciliated, secretory, undifferentiated and inflammatory cells
time: n/a
|
DGM-00073_lg.CHP
DGM-00073_lg.CEL
|
| Sample_geo_accession | GSM599913
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599913/suppl/GSM599913.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599913/suppl/GSM599913.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599914 | GPL570 |
|
large airway [DGM-00192]
|
large airway
|
department of genetic medicine id: DGM-00192
airway region: large airway
cell type: mixture of epithelium, basal, ciliated, secretory, undifferentiated and inflammatory cells
time: n/a
|
DGM-00192_lg.CHP
DGM-00192_lg.CEL
|
| Sample_geo_accession | GSM599914
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599914/suppl/GSM599914.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599914/suppl/GSM599914.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599915 | GPL570 |
|
large airway [DGM-00249]
|
large airway
|
department of genetic medicine id: DGM-00249
airway region: large airway
cell type: mixture of epithelium, basal, ciliated, secretory, undifferentiated and inflammatory cells
time: n/a
|
DGM-00249_lg.CHP
DGM-00249_lg.CEL
|
| Sample_geo_accession | GSM599915
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599915/suppl/GSM599915.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599915/suppl/GSM599915.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599916 | GPL570 |
|
large airway [DGM-00342]
|
large airway
|
department of genetic medicine id: DGM-00342
airway region: large airway
cell type: mixture of epithelium, basal, ciliated, secretory, undifferentiated and inflammatory cells
time: n/a
|
DGM-00342_lg.CHP
DGM-00342_lg.CEL
|
| Sample_geo_accession | GSM599916
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599916/suppl/GSM599916.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599916/suppl/GSM599916.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599917 | GPL570 |
|
large airway [DGM-00465]
|
large airway
|
department of genetic medicine id: DGM-00465
airway region: large airway
cell type: mixture of epithelium, basal, ciliated, secretory, undifferentiated and inflammatory cells
time: n/a
|
DGM-00465_lg.CHP
DGM-00465_lg.CEL
|
| Sample_geo_accession | GSM599917
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599917/suppl/GSM599917.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599917/suppl/GSM599917.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599918 | GPL570 |
|
large airway [DGM-00529]
|
large airway
|
department of genetic medicine id: DGM-00529
airway region: large airway
cell type: mixture of epithelium, basal, ciliated, secretory, undifferentiated and inflammatory cells
time: n/a
|
DGM-00529_lg.CHP
DGM-00529_lg.CEL
|
| Sample_geo_accession | GSM599918
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599918/suppl/GSM599918.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599918/suppl/GSM599918.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599919 | GPL570 |
|
large airway [DGM-00661]
|
large airway
|
department of genetic medicine id: DGM-00661
airway region: large airway
cell type: mixture of epithelium, basal, ciliated, secretory, undifferentiated and inflammatory cells
time: n/a
|
DGM-00661_lg.CHP
DGM-00661_lg.CEL
|
| Sample_geo_accession | GSM599919
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599919/suppl/GSM599919.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599919/suppl/GSM599919.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599920 | GPL570 |
|
large airway [DGM-00757]
|
large airway
|
department of genetic medicine id: DGM-00757
airway region: large airway
cell type: mixture of epithelium, basal, ciliated, secretory, undifferentiated and inflammatory cells
time: n/a
|
DGM-00757_lg.CHP
DGM-00757_lg.CEL
|
| Sample_geo_accession | GSM599920
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599920/suppl/GSM599920.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599920/suppl/GSM599920.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599921 | GPL570 |
|
large airway [DGM-00778]
|
large airway
|
department of genetic medicine id: DGM-00778
airway region: large airway
cell type: mixture of epithelium, basal, ciliated, secretory, undifferentiated and inflammatory cells
time: n/a
|
DGM-00778_lg.CHP
DGM-00778_lg.CEL
|
| Sample_geo_accession | GSM599921
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599921/suppl/GSM599921.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599921/suppl/GSM599921.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599922 | GPL570 |
|
large airway, basal cells [DGM-00564]
|
large airway, basal cells
|
department of genetic medicine id: DGM-00564
airway region: large airway
cell type: basal cell
time: n/a
|
DGM-00564_lg_BC.CHP
DGM-00564_lg_BC.CEL
|
| Sample_geo_accession | GSM599922
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599922/suppl/GSM599922.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599922/suppl/GSM599922.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599923 | GPL570 |
|
large airway, basal cells [DGM-01270]
|
large airway, basal cells
|
department of genetic medicine id: DGM-01270
airway region: large airway
cell type: basal cell
time: n/a
|
DGM-01270_lg_BC.CHP
DGM-01270_lg_BC.CEL
|
| Sample_geo_accession | GSM599923
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599923/suppl/GSM599923.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599923/suppl/GSM599923.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599924 | GPL570 |
|
large airway, basal cells [DGM-01610]
|
large airway, basal cells
|
department of genetic medicine id: DGM-01610
airway region: large airway
cell type: basal cell
time: n/a
|
DGM-01610_lg_BC.CHP
DGM-01610_lg_BC.CEL
|
| Sample_geo_accession | GSM599924
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599924/suppl/GSM599924.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599924/suppl/GSM599924.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599925 | GPL570 |
|
large airway, basal cells [DGM-01683]
|
large airway, basal cells
|
department of genetic medicine id: DGM-01683
airway region: large airway
cell type: basal cell
time: n/a
|
DGM-01683_lg_BC.CHP
DGM-01683_lg_BC.CEL
|
| Sample_geo_accession | GSM599925
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599925/suppl/GSM599925.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599925/suppl/GSM599925.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
GSM599926 | GPL570 |
|
large airway, basal cells [DGM-02012]
|
large airway, basal cells
|
department of genetic medicine id: DGM-02012
airway region: large airway
cell type: basal cell
time: n/a
|
DGM-02012_lg_BC.CHP
DGM-02012_lg_BC.CEL
|
| Sample_geo_accession | GSM599926
| | Sample_status | Public on Jun 10 2011
| | Sample_submission_date | Sep 24 2010
| | Sample_last_update_date | Jun 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599926/suppl/GSM599926.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM599nnn/GSM599926/suppl/GSM599926.CHP.gz
| | Sample_series_id | GSE24337
| | Sample_data_row_count | 54675
| | |
|
| |
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(2 groups will be compared at a time) |
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