Search results for the GEO ID: GSE24368 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM600916 | GPL1261 |
|
CbCln3 wild-type 1
|
Immortalized cell line, CD1 wild-type
|
strain: CD1
phenotype: wild-type
genotype: Cln3 +/+
cell type: cerebellar cells, nestin-positive, GFAP-negative
differentiation state: neuronal precursor cells
|
CbCln3_WT1
|
Sample_geo_accession | GSM600916
| Sample_status | Public on Feb 01 2011
| Sample_submission_date | Sep 25 2010
| Sample_last_update_date | Feb 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Untreated.
| Sample_growth_protocol_ch1 | DMEM, 10% FBS, 24mM KCl, pen/strep/glutamine, 200µg/ml G418, 5% CO2, 33˚C.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction and Qiagen Rneasy mini coulmn clean up.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix protocol.
| Sample_scan_protocol | Standard Affymetrix protocol.
| Sample_data_processing | gcRMA.
| Sample_platform_id | GPL1261
| Sample_contact_name | Susan,,Cotman
| Sample_contact_institute | MGH
| Sample_contact_address | 185 Cambridge Street
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02114
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM600nnn/GSM600916/suppl/GSM600916.cel.gz
| Sample_series_id | GSE24368
| Sample_data_row_count | 45101
| |
|
GSM600917 | GPL1261 |
|
CbCln3 wild-type 2
|
Immortalized cell line, CD1 wild-type
|
strain: CD1
phenotype: wild-type
genotype: Cln3 +/+
cell type: cerebellar cells, nestin-positive, GFAP-negative
differentiation state: neuronal precursor cells
|
CbCln3_WT2
|
Sample_geo_accession | GSM600917
| Sample_status | Public on Feb 01 2011
| Sample_submission_date | Sep 25 2010
| Sample_last_update_date | Feb 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Untreated.
| Sample_growth_protocol_ch1 | DMEM, 10% FBS, 24mM KCl, pen/strep/glutamine, 200µg/ml G418, 5% CO2, 33˚C.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction and Qiagen Rneasy mini coulmn clean up.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix protocol.
| Sample_scan_protocol | Standard Affymetrix protocol.
| Sample_data_processing | gcRMA.
| Sample_platform_id | GPL1261
| Sample_contact_name | Susan,,Cotman
| Sample_contact_institute | MGH
| Sample_contact_address | 185 Cambridge Street
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02114
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM600nnn/GSM600917/suppl/GSM600917.cel.gz
| Sample_series_id | GSE24368
| Sample_data_row_count | 45101
| |
|
GSM600918 | GPL1261 |
|
CbCln3 wild-type 3
|
Immortalized cell line, CD1 wild-type
|
strain: CD1
phenotype: wild-type
genotype: Cln3 +/+
cell type: cerebellar cells, nestin-positive, GFAP-negative
differentiation state: neuronal precursor cells
|
CbCln3_WT3
|
Sample_geo_accession | GSM600918
| Sample_status | Public on Feb 01 2011
| Sample_submission_date | Sep 25 2010
| Sample_last_update_date | Feb 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Untreated.
| Sample_growth_protocol_ch1 | DMEM, 10% FBS, 24mM KCl, pen/strep/glutamine, 200µg/ml G418, 5% CO2, 33˚C.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction and Qiagen Rneasy mini coulmn clean up.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix protocol.
| Sample_scan_protocol | Standard Affymetrix protocol.
| Sample_data_processing | gcRMA.
| Sample_platform_id | GPL1261
| Sample_contact_name | Susan,,Cotman
| Sample_contact_institute | MGH
| Sample_contact_address | 185 Cambridge Street
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02114
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM600nnn/GSM600918/suppl/GSM600918.cel.gz
| Sample_series_id | GSE24368
| Sample_data_row_count | 45101
| |
|
GSM600919 | GPL1261 |
|
CbCln3 mutant 1
|
Immortalized cell line, CD1 Cln3 mutant
|
strain: CD1
phenotype: Cln3 mutant
genotype: Cln3 ∆ex7/8/∆ex7/8
cell type: cerebellar cells, nestin-positive, GFAP-negative
differentiation state: neuronal precursor cells
|
CbCln3_MU1
|
Sample_geo_accession | GSM600919
| Sample_status | Public on Feb 01 2011
| Sample_submission_date | Sep 25 2010
| Sample_last_update_date | Feb 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Untreated.
| Sample_growth_protocol_ch1 | DMEM, 10% FBS, 24mM KCl, pen/strep/glutamine, 200µg/ml G418, 5% CO2, 33˚C.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction and Qiagen Rneasy mini coulmn clean up.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix protocol.
| Sample_scan_protocol | Standard Affymetrix protocol.
| Sample_data_processing | gcRMA.
| Sample_platform_id | GPL1261
| Sample_contact_name | Susan,,Cotman
| Sample_contact_institute | MGH
| Sample_contact_address | 185 Cambridge Street
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02114
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM600nnn/GSM600919/suppl/GSM600919.cel.gz
| Sample_series_id | GSE24368
| Sample_data_row_count | 45101
| |
|
GSM600920 | GPL1261 |
|
CbCln3 mutant 2
|
Immortalized cell line, CD1 Cln3 mutant
|
strain: CD1
phenotype: Cln3 mutant
genotype: Cln3 ∆ex7/8/∆ex7/8
cell type: cerebellar cells, nestin-positive, GFAP-negative
differentiation state: neuronal precursor cells
|
CbCln3_MU2
|
Sample_geo_accession | GSM600920
| Sample_status | Public on Feb 01 2011
| Sample_submission_date | Sep 25 2010
| Sample_last_update_date | Feb 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Untreated.
| Sample_growth_protocol_ch1 | DMEM, 10% FBS, 24mM KCl, pen/strep/glutamine, 200µg/ml G418, 5% CO2, 33˚C.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction and Qiagen Rneasy mini coulmn clean up.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix protocol.
| Sample_scan_protocol | Standard Affymetrix protocol.
| Sample_data_processing | gcRMA.
| Sample_platform_id | GPL1261
| Sample_contact_name | Susan,,Cotman
| Sample_contact_institute | MGH
| Sample_contact_address | 185 Cambridge Street
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02114
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM600nnn/GSM600920/suppl/GSM600920.cel.gz
| Sample_series_id | GSE24368
| Sample_data_row_count | 45101
| |
|
GSM600921 | GPL1261 |
|
CbCln3 mutant 3
|
Immortalized cell line, CD1 Cln3 mutant
|
strain: CD1
phenotype: Cln3 mutant
genotype: Cln3 ∆ex7/8/∆ex7/8
cell type: cerebellar cells, nestin-positive, GFAP-negative
differentiation state: neuronal precursor cells
|
CbCln3_MU3
|
Sample_geo_accession | GSM600921
| Sample_status | Public on Feb 01 2011
| Sample_submission_date | Sep 25 2010
| Sample_last_update_date | Feb 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Untreated.
| Sample_growth_protocol_ch1 | DMEM, 10% FBS, 24mM KCl, pen/strep/glutamine, 200µg/ml G418, 5% CO2, 33˚C.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction and Qiagen Rneasy mini coulmn clean up.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix protocol.
| Sample_scan_protocol | Standard Affymetrix protocol.
| Sample_data_processing | gcRMA.
| Sample_platform_id | GPL1261
| Sample_contact_name | Susan,,Cotman
| Sample_contact_institute | MGH
| Sample_contact_address | 185 Cambridge Street
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02114
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM600nnn/GSM600921/suppl/GSM600921.cel.gz
| Sample_series_id | GSE24368
| Sample_data_row_count | 45101
| |
|
GSM600922 | GPL1261 |
|
CbCln6 wild-type 1
|
Immortalized cell line, C57BL6 wild-type
|
strain: C57BL6
phenotype: wild-type
genotype: Cln6 +/+
cell type: cerebellar cells, nestin-positive, GFAP-negative
differentiation state: neuronal precursor cells
|
CbCln6_WT1
|
Sample_geo_accession | GSM600922
| Sample_status | Public on Feb 01 2011
| Sample_submission_date | Sep 25 2010
| Sample_last_update_date | Feb 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Untreated.
| Sample_growth_protocol_ch1 | DMEM, 10% FBS, 24mM KCl, pen/strep/glutamine, 200µg/ml G418, 5% CO2, 33˚C.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction and Qiagen Rneasy mini coulmn clean up.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix protocol.
| Sample_scan_protocol | Standard Affymetrix protocol.
| Sample_data_processing | gcRMA.
| Sample_platform_id | GPL1261
| Sample_contact_name | Susan,,Cotman
| Sample_contact_institute | MGH
| Sample_contact_address | 185 Cambridge Street
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02114
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM600nnn/GSM600922/suppl/GSM600922.cel.gz
| Sample_series_id | GSE24368
| Sample_data_row_count | 45101
| |
|
GSM600923 | GPL1261 |
|
CbCln6 wild-type 2
|
Immortalized cell line, C57BL6 wild-type
|
strain: C57BL6
phenotype: wild-type
genotype: Cln6 +/+
cell type: cerebellar cells, nestin-positive, GFAP-negative
differentiation state: neuronal precursor cells
|
CbCln6_WT2
|
Sample_geo_accession | GSM600923
| Sample_status | Public on Feb 01 2011
| Sample_submission_date | Sep 25 2010
| Sample_last_update_date | Feb 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Untreated.
| Sample_growth_protocol_ch1 | DMEM, 10% FBS, 24mM KCl, pen/strep/glutamine, 200µg/ml G418, 5% CO2, 33˚C.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction and Qiagen Rneasy mini coulmn clean up.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix protocol.
| Sample_scan_protocol | Standard Affymetrix protocol.
| Sample_data_processing | gcRMA.
| Sample_platform_id | GPL1261
| Sample_contact_name | Susan,,Cotman
| Sample_contact_institute | MGH
| Sample_contact_address | 185 Cambridge Street
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02114
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM600nnn/GSM600923/suppl/GSM600923.cel.gz
| Sample_series_id | GSE24368
| Sample_data_row_count | 45101
| |
|
GSM600924 | GPL1261 |
|
CbCln6 wild-type 3
|
Immortalized cell line, C57BL6 wild-type
|
strain: C57BL6
phenotype: wild-type
genotype: Cln6 +/+
cell type: cerebellar cells, nestin-positive, GFAP-negative
differentiation state: neuronal precursor cells
|
CbCln6_WT3
|
Sample_geo_accession | GSM600924
| Sample_status | Public on Feb 01 2011
| Sample_submission_date | Sep 25 2010
| Sample_last_update_date | Feb 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Untreated.
| Sample_growth_protocol_ch1 | DMEM, 10% FBS, 24mM KCl, pen/strep/glutamine, 200µg/ml G418, 5% CO2, 33˚C.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction and Qiagen Rneasy mini coulmn clean up.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix protocol.
| Sample_scan_protocol | Standard Affymetrix protocol.
| Sample_data_processing | gcRMA.
| Sample_platform_id | GPL1261
| Sample_contact_name | Susan,,Cotman
| Sample_contact_institute | MGH
| Sample_contact_address | 185 Cambridge Street
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02114
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM600nnn/GSM600924/suppl/GSM600924.cel.gz
| Sample_series_id | GSE24368
| Sample_data_row_count | 45101
| |
|
GSM600925 | GPL1261 |
|
CbCln6 mutant 1
|
Immortalized cell line, C57BL6 Cln6 mutant
|
strain: C57BL6
phenotype: Cln6 mutant
genotype: Cln6 nclf/nclf
cell type: cerebellar cells, nestin-positive, GFAP-negative
differentiation state: neuronal precursor cells
|
CbCln6_MU1
|
Sample_geo_accession | GSM600925
| Sample_status | Public on Feb 01 2011
| Sample_submission_date | Sep 25 2010
| Sample_last_update_date | Feb 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Untreated.
| Sample_growth_protocol_ch1 | DMEM, 10% FBS, 24mM KCl, pen/strep/glutamine, 200µg/ml G418, 5% CO2, 33˚C.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction and Qiagen Rneasy mini coulmn clean up.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix protocol.
| Sample_scan_protocol | Standard Affymetrix protocol.
| Sample_data_processing | gcRMA.
| Sample_platform_id | GPL1261
| Sample_contact_name | Susan,,Cotman
| Sample_contact_institute | MGH
| Sample_contact_address | 185 Cambridge Street
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02114
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM600nnn/GSM600925/suppl/GSM600925.cel.gz
| Sample_series_id | GSE24368
| Sample_data_row_count | 45101
| |
|
GSM600926 | GPL1261 |
|
CbCln6 mutant 2
|
Immortalized cell line, C57BL6 Cln6 mutant
|
strain: C57BL6
phenotype: Cln6 mutant
genotype: Cln6 nclf/nclf
cell type: cerebellar cells, nestin-positive, GFAP-negative
differentiation state: neuronal precursor cells
|
CbCln6_MU2
|
Sample_geo_accession | GSM600926
| Sample_status | Public on Feb 01 2011
| Sample_submission_date | Sep 25 2010
| Sample_last_update_date | Feb 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Untreated.
| Sample_growth_protocol_ch1 | DMEM, 10% FBS, 24mM KCl, pen/strep/glutamine, 200µg/ml G418, 5% CO2, 33˚C.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction and Qiagen Rneasy mini coulmn clean up.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix protocol.
| Sample_scan_protocol | Standard Affymetrix protocol.
| Sample_data_processing | gcRMA.
| Sample_platform_id | GPL1261
| Sample_contact_name | Susan,,Cotman
| Sample_contact_institute | MGH
| Sample_contact_address | 185 Cambridge Street
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02114
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM600nnn/GSM600926/suppl/GSM600926.cel.gz
| Sample_series_id | GSE24368
| Sample_data_row_count | 45101
| |
|
GSM600927 | GPL1261 |
|
CbCln6 mutant 3
|
Immortalized cell line, C57BL6 Cln6 mutant
|
strain: C57BL6
phenotype: Cln6 mutant
genotype: Cln6 nclf/nclf
cell type: cerebellar cells, nestin-positive, GFAP-negative
differentiation state: neuronal precursor cells
|
CbCln6_MU3
|
Sample_geo_accession | GSM600927
| Sample_status | Public on Feb 01 2011
| Sample_submission_date | Sep 25 2010
| Sample_last_update_date | Feb 01 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Untreated.
| Sample_growth_protocol_ch1 | DMEM, 10% FBS, 24mM KCl, pen/strep/glutamine, 200µg/ml G418, 5% CO2, 33˚C.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction and Qiagen Rneasy mini coulmn clean up.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| Sample_hyb_protocol | Standard Affymetrix protocol.
| Sample_scan_protocol | Standard Affymetrix protocol.
| Sample_data_processing | gcRMA.
| Sample_platform_id | GPL1261
| Sample_contact_name | Susan,,Cotman
| Sample_contact_institute | MGH
| Sample_contact_address | 185 Cambridge Street
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02114
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM600nnn/GSM600927/suppl/GSM600927.cel.gz
| Sample_series_id | GSE24368
| Sample_data_row_count | 45101
| |
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