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Search results for the GEO ID: GSE24451

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GSM ID

GPL ID

Select for analysis

Title

Source name

Description

Characteristics

GSM602521

GPL1261

WT1

liver tissue from 21 days old mice

tissue: liver strain: C57BL/6JBomTac genotype/variation: wildtype

Sample_geo_accession	GSM602521
Sample_status	Public on Nov 26 2010
Sample_submission_date	Sep 30 2010
Sample_last_update_date	Nov 26 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	15 ACBP-/- and 15 +/+ mice were divided into 6 groups with 5 individuals in each. Thus, each sample is made from a pool of equal amounts of RNA from 5 ACBP-/- or +/+ individuals, respectively.
Sample_growth_protocol_ch1	Fed state 21 days old mice were taken away from their mother at 8-11am, euthanized and dissected. Livers were snap frozen in liquid N2.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was cleaned up on Qiagen RNeasy columns to remove traces of organic solvents.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA isolated from mouse liver
Sample_hyb_protocol	After hybridization the hybridization mixture is removed and the GeneChips® are washed, stained with phycoerythrin-labeled Streptavidin, washed, incubated with biotinylated anti-streptavidin, and then restained with phycoerythrin-labeled Streptavidin to amplify the signals; these steps are carried out using the Affymetrix Fluidics Station.
Sample_scan_protocol	GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
Sample_platform_id	GPL1261
Sample_contact_name	Susanne,,Mandrup
Sample_contact_email	s.mandrup@bmb.sdu.dk
Sample_contact_phone	+45 6550 2340
Sample_contact_department	Biochemistry and Molecular Biology
Sample_contact_institute	University of Southern Denmark
Sample_contact_address	Campusvej 55
Sample_contact_city	Odense M
Sample_contact_zip/postal_code	5230
Sample_contact_country	Denmark
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM602nnn/GSM602521/suppl/GSM602521.CEL.gz
Sample_series_id	GSE24451
Sample_data_row_count	45101

GSM602522

GPL1261

WT2

liver tissue from 21 days old mice

tissue: liver strain: C57BL/6JBomTac genotype/variation: wildtype

Sample_geo_accession	GSM602522
Sample_status	Public on Nov 26 2010
Sample_submission_date	Sep 30 2010
Sample_last_update_date	Nov 26 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	15 ACBP-/- and 15 +/+ mice were divided into 6 groups with 5 individuals in each. Thus, each sample is made from a pool of equal amounts of RNA from 5 ACBP-/- or +/+ individuals, respectively.
Sample_growth_protocol_ch1	Fed state 21 days old mice were taken away from their mother at 8-11am, euthanized and dissected. Livers were snap frozen in liquid N2.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was cleaned up on Qiagen RNeasy columns to remove traces of organic solvents.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA isolated from mouse liver
Sample_hyb_protocol	After hybridization the hybridization mixture is removed and the GeneChips® are washed, stained with phycoerythrin-labeled Streptavidin, washed, incubated with biotinylated anti-streptavidin, and then restained with phycoerythrin-labeled Streptavidin to amplify the signals; these steps are carried out using the Affymetrix Fluidics Station.
Sample_scan_protocol	GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
Sample_platform_id	GPL1261
Sample_contact_name	Susanne,,Mandrup
Sample_contact_email	s.mandrup@bmb.sdu.dk
Sample_contact_phone	+45 6550 2340
Sample_contact_department	Biochemistry and Molecular Biology
Sample_contact_institute	University of Southern Denmark
Sample_contact_address	Campusvej 55
Sample_contact_city	Odense M
Sample_contact_zip/postal_code	5230
Sample_contact_country	Denmark
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM602nnn/GSM602522/suppl/GSM602522.CEL.gz
Sample_series_id	GSE24451
Sample_data_row_count	45101

GSM602523

GPL1261

WT3

liver tissue from 21 days old mice

tissue: liver strain: C57BL/6JBomTac genotype/variation: wildtype

Sample_geo_accession	GSM602523
Sample_status	Public on Nov 26 2010
Sample_submission_date	Sep 30 2010
Sample_last_update_date	Nov 26 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	15 ACBP-/- and 15 +/+ mice were divided into 6 groups with 5 individuals in each. Thus, each sample is made from a pool of equal amounts of RNA from 5 ACBP-/- or +/+ individuals, respectively.
Sample_growth_protocol_ch1	Fed state 21 days old mice were taken away from their mother at 8-11am, euthanized and dissected. Livers were snap frozen in liquid N2.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was cleaned up on Qiagen RNeasy columns to remove traces of organic solvents.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA isolated from mouse liver
Sample_hyb_protocol	After hybridization the hybridization mixture is removed and the GeneChips® are washed, stained with phycoerythrin-labeled Streptavidin, washed, incubated with biotinylated anti-streptavidin, and then restained with phycoerythrin-labeled Streptavidin to amplify the signals; these steps are carried out using the Affymetrix Fluidics Station.
Sample_scan_protocol	GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
Sample_platform_id	GPL1261
Sample_contact_name	Susanne,,Mandrup
Sample_contact_email	s.mandrup@bmb.sdu.dk
Sample_contact_phone	+45 6550 2340
Sample_contact_department	Biochemistry and Molecular Biology
Sample_contact_institute	University of Southern Denmark
Sample_contact_address	Campusvej 55
Sample_contact_city	Odense M
Sample_contact_zip/postal_code	5230
Sample_contact_country	Denmark
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM602nnn/GSM602523/suppl/GSM602523.CEL.gz
Sample_series_id	GSE24451
Sample_data_row_count	45101

GSM602524

GPL1261

KO1

liver tissue from 21 days old mice

tissue: liver strain: C57BL/6JBomTac genotype/variation: ACBP-/- (KO)

Sample_geo_accession	GSM602524
Sample_status	Public on Nov 26 2010
Sample_submission_date	Sep 30 2010
Sample_last_update_date	Nov 26 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	15 ACBP-/- and 15 +/+ mice were divided into 6 groups with 5 individuals in each. Thus, each sample is made from a pool of equal amounts of RNA from 5 ACBP-/- or +/+ individuals, respectively.
Sample_growth_protocol_ch1	Fed state 21 days old mice were taken away from their mother at 8-11am, euthanized and dissected. Livers were snap frozen in liquid N2.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was cleaned up on Qiagen RNeasy columns to remove traces of organic solvents.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA isolated from mouse liver
Sample_hyb_protocol	After hybridization the hybridization mixture is removed and the GeneChips® are washed, stained with phycoerythrin-labeled Streptavidin, washed, incubated with biotinylated anti-streptavidin, and then restained with phycoerythrin-labeled Streptavidin to amplify the signals; these steps are carried out using the Affymetrix Fluidics Station.
Sample_scan_protocol	GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
Sample_platform_id	GPL1261
Sample_contact_name	Susanne,,Mandrup
Sample_contact_email	s.mandrup@bmb.sdu.dk
Sample_contact_phone	+45 6550 2340
Sample_contact_department	Biochemistry and Molecular Biology
Sample_contact_institute	University of Southern Denmark
Sample_contact_address	Campusvej 55
Sample_contact_city	Odense M
Sample_contact_zip/postal_code	5230
Sample_contact_country	Denmark
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM602nnn/GSM602524/suppl/GSM602524.CEL.gz
Sample_series_id	GSE24451
Sample_data_row_count	45101

GSM602525

GPL1261

KO2

liver tissue from 21 days old mice

tissue: liver strain: C57BL/6JBomTac genotype/variation: ACBP-/- (KO)

Sample_geo_accession	GSM602525
Sample_status	Public on Nov 26 2010
Sample_submission_date	Sep 30 2010
Sample_last_update_date	Nov 26 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	15 ACBP-/- and 15 +/+ mice were divided into 6 groups with 5 individuals in each. Thus, each sample is made from a pool of equal amounts of RNA from 5 ACBP-/- or +/+ individuals, respectively.
Sample_growth_protocol_ch1	Fed state 21 days old mice were taken away from their mother at 8-11am, euthanized and dissected. Livers were snap frozen in liquid N2.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was cleaned up on Qiagen RNeasy columns to remove traces of organic solvents.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA isolated from mouse liver
Sample_hyb_protocol	After hybridization the hybridization mixture is removed and the GeneChips® are washed, stained with phycoerythrin-labeled Streptavidin, washed, incubated with biotinylated anti-streptavidin, and then restained with phycoerythrin-labeled Streptavidin to amplify the signals; these steps are carried out using the Affymetrix Fluidics Station.
Sample_scan_protocol	GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
Sample_platform_id	GPL1261
Sample_contact_name	Susanne,,Mandrup
Sample_contact_email	s.mandrup@bmb.sdu.dk
Sample_contact_phone	+45 6550 2340
Sample_contact_department	Biochemistry and Molecular Biology
Sample_contact_institute	University of Southern Denmark
Sample_contact_address	Campusvej 55
Sample_contact_city	Odense M
Sample_contact_zip/postal_code	5230
Sample_contact_country	Denmark
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM602nnn/GSM602525/suppl/GSM602525.CEL.gz
Sample_series_id	GSE24451
Sample_data_row_count	45101

GSM602526

GPL1261

KO3

liver tissue from 21 days old mice

tissue: liver strain: C57BL/6JBomTac genotype/variation: ACBP-/- (KO)

Sample_geo_accession	GSM602526
Sample_status	Public on Nov 26 2010
Sample_submission_date	Sep 30 2010
Sample_last_update_date	Nov 26 2010
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	15 ACBP-/- and 15 +/+ mice were divided into 6 groups with 5 individuals in each. Thus, each sample is made from a pool of equal amounts of RNA from 5 ACBP-/- or +/+ individuals, respectively.
Sample_growth_protocol_ch1	Fed state 21 days old mice were taken away from their mother at 8-11am, euthanized and dissected. Livers were snap frozen in liquid N2.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions. RNA was cleaned up on Qiagen RNeasy columns to remove traces of organic solvents.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA isolated from mouse liver
Sample_hyb_protocol	After hybridization the hybridization mixture is removed and the GeneChips® are washed, stained with phycoerythrin-labeled Streptavidin, washed, incubated with biotinylated anti-streptavidin, and then restained with phycoerythrin-labeled Streptavidin to amplify the signals; these steps are carried out using the Affymetrix Fluidics Station.
Sample_scan_protocol	GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
Sample_platform_id	GPL1261
Sample_contact_name	Susanne,,Mandrup
Sample_contact_email	s.mandrup@bmb.sdu.dk
Sample_contact_phone	+45 6550 2340
Sample_contact_department	Biochemistry and Molecular Biology
Sample_contact_institute	University of Southern Denmark
Sample_contact_address	Campusvej 55
Sample_contact_city	Odense M
Sample_contact_zip/postal_code	5230
Sample_contact_country	Denmark
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM602nnn/GSM602526/suppl/GSM602526.CEL.gz
Sample_series_id	GSE24451
Sample_data_row_count	45101

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