Search results for the GEO ID: GSE24493  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM603097 | GPL570 |
|
KCL-22 non-treated
|
CML cell line: KCL-22
|
cell line: KCL-22
tissue: Myeloid leukemia cells
agent: untreated
|
KCL-22 leukemia cells were cultured in absence of STI571 (Imatinib).
For more information about the cell line, please check: www.dsmz.de
Q246_A_HG_U133_Plus_2_01_1__UCL22_.CEL
|
| Sample_geo_accession | GSM603097
| | Sample_status | Public on Oct 10 2010
| | Sample_submission_date | Oct 03 2010
| | Sample_last_update_date | Oct 05 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction Method: Qiagen RNeasy Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_hyb_protocol | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_scan_protocol | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_data_processing | RMA signal intensities obtained using BRB-arraytool software which calculates the RMA-values with the affy package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Müschen
| | Sample_contact_email | mmuschen@chla.usc.edu
| | Sample_contact_phone | + 1 323 361 5592
| | Sample_contact_fax | +1 323 361 1516
| | Sample_contact_laboratory | Müschen Lab
| | Sample_contact_department | Childrens Hospital Los Angeles
| | Sample_contact_institute | University of Southern California
| | Sample_contact_address | 4650 Sunset Blvd
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90027
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.lymphocytes.de/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM603nnn/GSM603097/suppl/GSM603097.CEL.gz
| | Sample_series_id | GSE24493
| | Sample_data_row_count | 54675
| | |
|
GSM603098 | GPL570 |
|
KCL-22 Imatinib-treated
|
CML cell line: KCL-22
|
cell line: KCL-22
tissue: Myeloid leukemia cells
agent: Imatinib
|
KCL-22 leukemia cells were incubated with 10 µM STI571 (Imatinib) for 16 hours.
For more information about the cell line, please check: www.dsmz.de
Q247_A_HG_U133_Plus_2_01_1__UCL22_STI_.CEL
|
| Sample_geo_accession | GSM603098
| | Sample_status | Public on Oct 10 2010
| | Sample_submission_date | Oct 03 2010
| | Sample_last_update_date | Oct 05 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction Method: Qiagen RNeasy Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_hyb_protocol | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_scan_protocol | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_data_processing | RMA signal intensities obtained using BRB-arraytool software which calculates the RMA-values with the affy package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Müschen
| | Sample_contact_email | mmuschen@chla.usc.edu
| | Sample_contact_phone | + 1 323 361 5592
| | Sample_contact_fax | +1 323 361 1516
| | Sample_contact_laboratory | Müschen Lab
| | Sample_contact_department | Childrens Hospital Los Angeles
| | Sample_contact_institute | University of Southern California
| | Sample_contact_address | 4650 Sunset Blvd
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90027
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.lymphocytes.de/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM603nnn/GSM603098/suppl/GSM603098.CEL.gz
| | Sample_series_id | GSE24493
| | Sample_data_row_count | 54675
| | |
|
GSM603099 | GPL570 |
|
KU-812 non-treated
|
CML cell line: KU-812
|
cell line: KU-812
tissue: Myeloid leukemia cells
agent: untreated
|
KU-812 leukemia cells were cultured in absence of STI571 (Imatinib).
For more information about the cell line, please check: www.dsmz.de
Q248_A_HG_U133_Plus_2_01_1__UU812_.CEL
|
| Sample_geo_accession | GSM603099
| | Sample_status | Public on Oct 10 2010
| | Sample_submission_date | Oct 03 2010
| | Sample_last_update_date | Oct 05 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction Method: Qiagen RNeasy Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_hyb_protocol | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_scan_protocol | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_data_processing | RMA signal intensities obtained using BRB-arraytool software which calculates the RMA-values with the affy package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Müschen
| | Sample_contact_email | mmuschen@chla.usc.edu
| | Sample_contact_phone | + 1 323 361 5592
| | Sample_contact_fax | +1 323 361 1516
| | Sample_contact_laboratory | Müschen Lab
| | Sample_contact_department | Childrens Hospital Los Angeles
| | Sample_contact_institute | University of Southern California
| | Sample_contact_address | 4650 Sunset Blvd
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90027
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.lymphocytes.de/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM603nnn/GSM603099/suppl/GSM603099.CEL.gz
| | Sample_series_id | GSE24493
| | Sample_data_row_count | 54675
| | |
|
GSM603100 | GPL570 |
|
KU-812 Imatinib-treated
|
CML cell line: KU-812
|
cell line: KU-812
tissue: Myeloid leukemia cells
agent: Imatinib
|
KU-812 leukemia cells were incubated with 10 µM STI571 (Imatinib) for 16 hours.
For more information about the cell line, please check: www.dsmz.de
Q249_A_HG_U133_Plus_2_01_1__UU812_STI_.CEL
|
| Sample_geo_accession | GSM603100
| | Sample_status | Public on Oct 10 2010
| | Sample_submission_date | Oct 03 2010
| | Sample_last_update_date | Oct 05 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction Method: Qiagen RNeasy Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_hyb_protocol | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_scan_protocol | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_data_processing | RMA signal intensities obtained using BRB-arraytool software which calculates the RMA-values with the affy package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Müschen
| | Sample_contact_email | mmuschen@chla.usc.edu
| | Sample_contact_phone | + 1 323 361 5592
| | Sample_contact_fax | +1 323 361 1516
| | Sample_contact_laboratory | Müschen Lab
| | Sample_contact_department | Childrens Hospital Los Angeles
| | Sample_contact_institute | University of Southern California
| | Sample_contact_address | 4650 Sunset Blvd
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90027
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.lymphocytes.de/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM603nnn/GSM603100/suppl/GSM603100.CEL.gz
| | Sample_series_id | GSE24493
| | Sample_data_row_count | 54675
| | |
|
GSM603102 | GPL570 |
|
JURL-MK1 Imatinib-treated
|
CML cell line: JURL-MK1
|
cell line: JURL-MK1
tissue: Myeloid leukemia cells
agent: Imatinib
|
JURL-MK1 leukemia cells were incubated with 10 µM STI571 (Imatinib) for 16 hours.
For more information about the cell line, please check: www.dsmz.de
Q251_A_HG_U133_Plus_2_01_1__3WL_STI_.CEL
|
| Sample_geo_accession | GSM603102
| | Sample_status | Public on Oct 10 2010
| | Sample_submission_date | Oct 03 2010
| | Sample_last_update_date | Oct 05 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction Method: Qiagen RNeasy Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_hyb_protocol | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_scan_protocol | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual)
| | Sample_data_processing | RMA signal intensities obtained using BRB-arraytool software which calculates the RMA-values with the affy package from Bioconductor.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Müschen
| | Sample_contact_email | mmuschen@chla.usc.edu
| | Sample_contact_phone | + 1 323 361 5592
| | Sample_contact_fax | +1 323 361 1516
| | Sample_contact_laboratory | Müschen Lab
| | Sample_contact_department | Childrens Hospital Los Angeles
| | Sample_contact_institute | University of Southern California
| | Sample_contact_address | 4650 Sunset Blvd
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90027
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.lymphocytes.de/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM603nnn/GSM603102/suppl/GSM603102.CEL.gz
| | Sample_series_id | GSE24493
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
| Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
| Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
| |
Filter results by number of probes |
|
|
