Search results for the GEO ID: GSE24733 |
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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM609201 | GPL570 |
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Aire1
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293T-Aire
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cell type: 293T cells transfected with pCMV-Aire expression vector
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293T cells transfected with pCMV-Aire expression vector
|
Sample_geo_accession | GSM609201
| Sample_status | Public on Oct 16 2010
| Sample_submission_date | Oct 15 2010
| Sample_last_update_date | Oct 15 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | 293T cells were transfected either by pCMV-Aire (6ug/plate) or empty pCMV (6ug/plate) using Mirus reagent, according to manufacturer's instructions
| Sample_growth_protocol_ch1 | 293T cells were grown on 10cm plates in DMEM containing 10% FBS under standard TC conditions
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted 48 hrs post transfection by Trizol extraction according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner.
| Sample_data_processing | The data were normalized and analyzed with Genepattern software.
| Sample_platform_id | GPL570
| Sample_contact_name | CBDM,,Lab
| Sample_contact_email | cbdm@hms.harvard.edu
| Sample_contact_phone | 617-432-7747
| Sample_contact_laboratory | CBDM
| Sample_contact_department | Microbiology and Immunobiology
| Sample_contact_institute | Harvard Medical School
| Sample_contact_address | 77 Avenue Louis Pasteur
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609201/suppl/GSM609201.CEL.gz
| Sample_series_id | GSE24733
| Sample_data_row_count | 54675
| |
|
GSM609202 | GPL570 |
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Ctr1
|
293T-Control
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cell type: 293T cells transfected with pCMV empty expression vector
|
293T cells transfected with pCMV empty expression vector
|
Sample_geo_accession | GSM609202
| Sample_status | Public on Oct 16 2010
| Sample_submission_date | Oct 15 2010
| Sample_last_update_date | Oct 15 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | 293T cells were transfected either by pCMV-Aire (6ug/plate) or empty pCMV (6ug/plate) using Mirus reagent, according to manufacturer's instructions
| Sample_growth_protocol_ch1 | 293T cells were grown on 10cm plates in DMEM containing 10% FBS under standard TC conditions
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted 48 hrs post transfection by Trizol extraction according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner.
| Sample_data_processing | The data were normalized and analyzed with Genepattern software.
| Sample_platform_id | GPL570
| Sample_contact_name | CBDM,,Lab
| Sample_contact_email | cbdm@hms.harvard.edu
| Sample_contact_phone | 617-432-7747
| Sample_contact_laboratory | CBDM
| Sample_contact_department | Microbiology and Immunobiology
| Sample_contact_institute | Harvard Medical School
| Sample_contact_address | 77 Avenue Louis Pasteur
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609202/suppl/GSM609202.CEL.gz
| Sample_series_id | GSE24733
| Sample_data_row_count | 54675
| |
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GSM609203 | GPL570 |
|
Aire2
|
293T-Aire
|
cell type: 293T cells transfected with pCMV-Aire expression vector
|
293T cells transfected with pCMV-Aire expression vector
|
Sample_geo_accession | GSM609203
| Sample_status | Public on Oct 16 2010
| Sample_submission_date | Oct 15 2010
| Sample_last_update_date | Oct 15 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | 293T cells were transfected either by pCMV-Aire (6ug/plate) or empty pCMV (6ug/plate) using Mirus reagent, according to manufacturer's instructions
| Sample_growth_protocol_ch1 | 293T cells were grown on 10cm plates in DMEM containing 10% FBS under standard TC conditions
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted 48 hrs post transfection by Trizol extraction according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner.
| Sample_data_processing | The data were normalized and analyzed with Genepattern software.
| Sample_platform_id | GPL570
| Sample_contact_name | CBDM,,Lab
| Sample_contact_email | cbdm@hms.harvard.edu
| Sample_contact_phone | 617-432-7747
| Sample_contact_laboratory | CBDM
| Sample_contact_department | Microbiology and Immunobiology
| Sample_contact_institute | Harvard Medical School
| Sample_contact_address | 77 Avenue Louis Pasteur
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609203/suppl/GSM609203.CEL.gz
| Sample_series_id | GSE24733
| Sample_data_row_count | 54675
| |
|
GSM609204 | GPL570 |
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Aire3
|
293T-Aire
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cell type: 293T cells transfected with pCMV-Aire expression vector
|
293T cells transfected with pCMV-Aire expression vector
|
Sample_geo_accession | GSM609204
| Sample_status | Public on Oct 16 2010
| Sample_submission_date | Oct 15 2010
| Sample_last_update_date | Oct 15 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | 293T cells were transfected either by pCMV-Aire (6ug/plate) or empty pCMV (6ug/plate) using Mirus reagent, according to manufacturer's instructions
| Sample_growth_protocol_ch1 | 293T cells were grown on 10cm plates in DMEM containing 10% FBS under standard TC conditions
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted 48 hrs post transfection by Trizol extraction according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner.
| Sample_data_processing | The data were normalized and analyzed with Genepattern software.
| Sample_platform_id | GPL570
| Sample_contact_name | CBDM,,Lab
| Sample_contact_email | cbdm@hms.harvard.edu
| Sample_contact_phone | 617-432-7747
| Sample_contact_laboratory | CBDM
| Sample_contact_department | Microbiology and Immunobiology
| Sample_contact_institute | Harvard Medical School
| Sample_contact_address | 77 Avenue Louis Pasteur
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609204/suppl/GSM609204.CEL.gz
| Sample_series_id | GSE24733
| Sample_data_row_count | 54675
| |
|
GSM609205 | GPL570 |
|
Ctr2
|
293T-Control
|
cell type: 293T cells transfected with pCMV empty expression vector
|
293T cells transfected with pCMV empty expression vector
|
Sample_geo_accession | GSM609205
| Sample_status | Public on Oct 16 2010
| Sample_submission_date | Oct 15 2010
| Sample_last_update_date | Oct 15 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | 293T cells were transfected either by pCMV-Aire (6ug/plate) or empty pCMV (6ug/plate) using Mirus reagent, according to manufacturer's instructions
| Sample_growth_protocol_ch1 | 293T cells were grown on 10cm plates in DMEM containing 10% FBS under standard TC conditions
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted 48 hrs post transfection by Trizol extraction according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner.
| Sample_data_processing | The data were normalized and analyzed with Genepattern software.
| Sample_platform_id | GPL570
| Sample_contact_name | CBDM,,Lab
| Sample_contact_email | cbdm@hms.harvard.edu
| Sample_contact_phone | 617-432-7747
| Sample_contact_laboratory | CBDM
| Sample_contact_department | Microbiology and Immunobiology
| Sample_contact_institute | Harvard Medical School
| Sample_contact_address | 77 Avenue Louis Pasteur
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609205/suppl/GSM609205.CEL.gz
| Sample_series_id | GSE24733
| Sample_data_row_count | 54675
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