Search results for the GEO ID: GSE24736  |
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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM609252 | GPL570 |
|
HD17-C/C
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, C/C alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: C/C
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from C/C patients (non-carriers of the polymorphism).
|
| Sample_geo_accession | GSM609252
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609252/suppl/GSM609252.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609252/suppl/GSM609252.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609253 | GPL570 |
|
HD07-C/C
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, C/C alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: C/C
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from C/C patients (non-carriers of the polymorphism).
|
| Sample_geo_accession | GSM609253
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609253/suppl/GSM609253.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609253/suppl/GSM609253.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609254 | GPL570 |
|
HD16-C/C
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, C/C alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: C/C
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from C/C patients (non-carriers of the polymorphism).
|
| Sample_geo_accession | GSM609254
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609254/suppl/GSM609254.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609254/suppl/GSM609254.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609255 | GPL570 |
|
HD10-C/C
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, C/C alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: C/C
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from C/C patients (non-carriers of the polymorphism).
|
| Sample_geo_accession | GSM609255
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609255/suppl/GSM609255.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609255/suppl/GSM609255.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609256 | GPL570 |
|
HD06-C/C
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, C/C alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: C/C
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from C/C patients (non-carriers of the polymorphism).
|
| Sample_geo_accession | GSM609256
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609256/suppl/GSM609256.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609256/suppl/GSM609256.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609257 | GPL570 |
|
HD1400-C/C
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, C/C alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: C/C
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from C/C patients (non-carriers of the polymorphism).
|
| Sample_geo_accession | GSM609257
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609257/suppl/GSM609257.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609257/suppl/GSM609257.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609258 | GPL570 |
|
HD1424-C/C
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, C/C alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: C/C
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from C/C patients (non-carriers of the polymorphism).
|
| Sample_geo_accession | GSM609258
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609258/suppl/GSM609258.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609258/suppl/GSM609258.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609259 | GPL570 |
|
HD1425-C/C
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, C/C alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: C/C
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from C/C patients (non-carriers of the polymorphism).
|
| Sample_geo_accession | GSM609259
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609259/suppl/GSM609259.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609259/suppl/GSM609259.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609260 | GPL570 |
|
HD750-C/T
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, C/T alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: C/T
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from C/T patients (carriers of 1 allele of the polymorphism).
|
| Sample_geo_accession | GSM609260
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609260/suppl/GSM609260.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609260/suppl/GSM609260.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609261 | GPL570 |
|
HD12-C/T
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, C/T alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: C/T
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from C/T patients (carriers of 1 allele of the polymorphism).
|
| Sample_geo_accession | GSM609261
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609261/suppl/GSM609261.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609261/suppl/GSM609261.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609262 | GPL570 |
|
HD13-C/T
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, C/T alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: C/T
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from C/T patients (carriers of 1 allele of the polymorphism).
|
| Sample_geo_accession | GSM609262
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609262/suppl/GSM609262.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609262/suppl/GSM609262.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609263 | GPL570 |
|
HD862-C/T
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, C/T alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: C/T
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from C/T patients (carriers of 1 allele of the polymorphism).
|
| Sample_geo_accession | GSM609263
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609263/suppl/GSM609263.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609263/suppl/GSM609263.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609264 | GPL570 |
|
HD-CT2-C/T
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, C/T alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: C/T
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from C/T patients (carriers of 1 allele of the polymorphism).
|
| Sample_geo_accession | GSM609264
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609264/suppl/GSM609264.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609264/suppl/GSM609264.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609265 | GPL570 |
|
HD535-T/T
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, T/T alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: T/T
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from T/T patients (carriers of 2 alleles of the polymorphism).
|
| Sample_geo_accession | GSM609265
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609265/suppl/GSM609265.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609265/suppl/GSM609265.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609266 | GPL570 |
|
HD837-T/T
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, T/T alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: T/T
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from T/T patients (carriers of 2 alleles of the polymorphism).
|
| Sample_geo_accession | GSM609266
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609266/suppl/GSM609266.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609266/suppl/GSM609266.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
GSM609267 | GPL570 |
|
HD138-T/T
|
CD19+CD10-CD21+CD27- conventional mature naive B cells, T/T alleles
|
cell type: CD19+CD10-CD21+CD27- conventional mature naive B cell
ptpn22 alleles: T/T
|
Gene expression data from CD19+CD10-CD21+CD27- conventional mature naive B cells from T/T patients (carriers of 2 alleles of the polymorphism).
|
| Sample_geo_accession | GSM609267
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | CD19+CD10-CD21+CD27- conventional mature naive B cells were batch sorted by FACS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted from batch-sorted CD19+CD10-CD21+CD27- conventional mature naive B cells using the Absolutely RNA microprep kit (Stratagene). 100-200 ng of RNA was obtained per sample, and the quality of the purified RNA was assessed by the Bioanalyzer from Agilent.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Using the Ovation biotin system kit from Nugen, 30-50ng of RNA was amplified and labeled to produce cDNA.
| | Sample_hyb_protocol | Labeled cDNA was hybridized on chips containing the whole human genome (Human Genome U133 Plus 2.0 from Affymetrix).
| | Sample_scan_protocol | GeneChip Scanner 3000 7G using Affymetrix GeneChip Operating Software. The target signal intensity from each chip was scaled to 500.
| | Sample_data_processing | The data normalization and statistical analysis were performed with GeneSpring GX7 software (Agilent). We used the per-chip and per-gene normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Laurence,,Menard
| | Sample_contact_email | laurence.menard@yale.edu
| | Sample_contact_laboratory | Meffre
| | Sample_contact_department | Immunobiology-HTI
| | Sample_contact_institute | Yale School of Medicine
| | Sample_contact_address | 300 George st
| | Sample_contact_city | New Haven
| | Sample_contact_state | CT
| | Sample_contact_zip/postal_code | 06511
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609267/suppl/GSM609267.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609267/suppl/GSM609267.CHP.gz
| | Sample_series_id | GSE24736
| | Sample_data_row_count | 54675
| | |
|
| |
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