Search results for the GEO ID: GSE24739  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM609346 | GPL570 |
|
1G0_CML
|
CML CD34+ G0 cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G0
disease state: chronic myelogenous leukemia (CML)
cml phase: chronic
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609346
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609346/suppl/GSM609346.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609347 | GPL570 |
|
2G0_CML
|
CML CD34+ G0 cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G0
disease state: chronic myelogenous leukemia (CML)
cml phase: chronic
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609347
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609347/suppl/GSM609347.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609348 | GPL570 |
|
3G0_CML
|
CML CD34+ G0 cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G0
disease state: chronic myelogenous leukemia (CML)
cml phase: accelerated
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609348
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609348/suppl/GSM609348.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609349 | GPL570 |
|
4G0_CML
|
CML CD34+ G0 cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G0
disease state: chronic myelogenous leukemia (CML)
cml phase: chronic
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609349
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609349/suppl/GSM609349.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609350 | GPL570 |
|
5G0_CML
|
CML CD34+ G0 cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G0
disease state: chronic myelogenous leukemia (CML)
cml phase: accelerated
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609350
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609350/suppl/GSM609350.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609351 | GPL570 |
|
6G0_CML
|
CML CD34+ G0 cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G0
disease state: chronic myelogenous leukemia (CML)
cml phase: accelerated
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609351
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609351/suppl/GSM609351.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609352 | GPL570 |
|
7G0_CML
|
CML CD34+ G0 cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G0
disease state: chronic myelogenous leukemia (CML)
cml phase: chronic
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609352
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609352/suppl/GSM609352.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609353 | GPL570 |
|
8G0_CML
|
CML CD34+ G0 cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G0
disease state: chronic myelogenous leukemia (CML)
cml phase: chronic
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609353
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609353/suppl/GSM609353.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609354 | GPL570 |
|
1G0_Normal
|
Normal CD34+ G0 cells
|
tissue: bone marrow
cell type: CD34+
cell cycle phase: G0
disease state: normal
|
Gene expression data from normal bone marrow sample.
|
| Sample_geo_accession | GSM609354
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609354/suppl/GSM609354.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609355 | GPL570 |
|
2G0_Normal
|
Normal CD34+ G0 cells
|
tissue: bone marrow
cell type: CD34+
cell cycle phase: G0
disease state: normal
|
Gene expression data from normal bone marrow sample.
|
| Sample_geo_accession | GSM609355
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609355/suppl/GSM609355.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609356 | GPL570 |
|
3G0_Normal
|
Normal CD34+ G0 cells
|
tissue: bone marrow
cell type: CD34+
cell cycle phase: G0
disease state: normal
|
Gene expression data from normal bone marrow sample.
|
| Sample_geo_accession | GSM609356
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609356/suppl/GSM609356.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609357 | GPL570 |
|
4G0_Normal
|
Normal CD34+ G0 cells
|
tissue: bone marrow
cell type: CD34+
cell cycle phase: G0
disease state: normal
|
Gene expression data from normal bone marrow sample.
|
| Sample_geo_accession | GSM609357
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609357/suppl/GSM609357.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609358 | GPL570 |
|
1G1_CML
|
CML CD34+ G1/S/G2/M cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G1/S/G2/M
disease state: chronic myelogenous leukemia (CML)
cml phase: chronic
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609358
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609358/suppl/GSM609358.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609359 | GPL570 |
|
2G1_CML
|
CML CD34+ G1/S/G2/M cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G1/S/G2/M
disease state: chronic myelogenous leukemia (CML)
cml phase: chronic
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609359
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609359/suppl/GSM609359.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609360 | GPL570 |
|
3G1_CML
|
CML CD34+ G1/S/G2/M cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G1/S/G2/M
disease state: chronic myelogenous leukemia (CML)
cml phase: accelerated
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609360
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609360/suppl/GSM609360.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609361 | GPL570 |
|
4G1_CML
|
CML CD34+ G1/S/G2/M cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G1/S/G2/M
disease state: chronic myelogenous leukemia (CML)
cml phase: chronic
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609361
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609361/suppl/GSM609361.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609362 | GPL570 |
|
5G1_CML
|
CML CD34+ G1/S/G2/M cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G1/S/G2/M
disease state: chronic myelogenous leukemia (CML)
cml phase: accelerated
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609362
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609362/suppl/GSM609362.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609363 | GPL570 |
|
6G1_CML
|
CML CD34+ G1/S/G2/M cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G1/S/G2/M
disease state: chronic myelogenous leukemia (CML)
cml phase: accelerated
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609363
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609363/suppl/GSM609363.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609364 | GPL570 |
|
7G1_CML
|
CML CD34+ G1/S/G2/M cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G1/S/G2/M
disease state: chronic myelogenous leukemia (CML)
cml phase: chronic
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609364
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609364/suppl/GSM609364.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609365 | GPL570 |
|
8G1_CML
|
CML CD34+ G1/S/G2/M cells
|
tissue: peripheral blood
cell type: CD34+
cell cycle phase: G1/S/G2/M
disease state: chronic myelogenous leukemia (CML)
cml phase: chronic
|
Gene expression data from chronic myelogenous leukemia patient.
|
| Sample_geo_accession | GSM609365
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609365/suppl/GSM609365.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609366 | GPL570 |
|
1G1_Normal
|
Normal CD34+ G1/S/G2/M cells
|
tissue: bone marrow
cell type: CD34+
cell cycle phase: G1/S/G2/M
disease state: normal
|
Gene expression data from normal bone marrow sample.
|
| Sample_geo_accession | GSM609366
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609366/suppl/GSM609366.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609367 | GPL570 |
|
2G1_Normal
|
Normal CD34+ G1/S/G2/M cells
|
tissue: bone marrow
cell type: CD34+
cell cycle phase: G1/S/G2/M
disease state: normal
|
Gene expression data from normal bone marrow sample.
|
| Sample_geo_accession | GSM609367
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609367/suppl/GSM609367.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609368 | GPL570 |
|
3G1_Normal
|
Normal CD34+ G1/S/G2/M cells
|
tissue: bone marrow
cell type: CD34+
cell cycle phase: G1/S/G2/M
disease state: normal
|
Gene expression data from normal bone marrow sample.
|
| Sample_geo_accession | GSM609368
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609368/suppl/GSM609368.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
GSM609369 | GPL570 |
|
4G1_Normal
|
Normal CD34+ G1/S/G2/M cells
|
tissue: bone marrow
cell type: CD34+
cell cycle phase: G1/S/G2/M
disease state: normal
|
Gene expression data from normal bone marrow sample.
|
| Sample_geo_accession | GSM609369
| | Sample_status | Public on Oct 16 2010
| | Sample_submission_date | Oct 15 2010
| | Sample_last_update_date | Oct 15 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20ng total RNA using the GeneChip two-cycle target labeling kit (Affymetrix, Inc., Santa Clara, CA, U.S.)
| | Sample_hyb_protocol | Ten micrograms of labeled and fragmented cRNA were hybridized to the Human Genome U133 plus 2.0 array (Affymetrix) at 45°C for 16 h.
| | Sample_scan_protocol | Chips were scanned with a high-numerical Aperture and flying objective (FOL) lens in the GS3000 scanner (Affymetrix).
| | Sample_data_processing | The microarray data were quantile-normalized and the gene expression values were estimated using the RMA method. R 2.7.0 and package affy was used to process the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | quincy,,mo
| | Sample_contact_email | moq@mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM609nnn/GSM609369/suppl/GSM609369.CEL.gz
| | Sample_series_id | GSE24739
| | Sample_data_row_count | 54613
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
