Search results for the GEO ID: GSE24773  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM610238 | GPL1261 |
|
BM stroma Wildtype, biological rep1
|
Primary bone marrow stroma from Wild-type mice
|
tissue: Pimary bone marrow stroma
strain: C57BL/6
genotype: Wild-type
age: 3-4 months
|
Gene expression data from primary bone marrow stroma derived from Wildtype mice
|
| Sample_geo_accession | GSM610238
| | Sample_status | Public on Mar 01 2011
| | Sample_submission_date | Oct 18 2010
| | Sample_last_update_date | Mar 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Bone marrow was plated in M5300 media for 2 weeks to establish a stroma layer. The stroma layer was then irradiated with 1500 cGy and a complete media change was performed.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from primary bone marrow stroma cells using the RNeasy Midi Kit (Qiagen) according the manufacture's instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Followed standard Affymetrix protocols
| | Sample_hyb_protocol | Followed standard Affymetrix protocols
| | Sample_scan_protocol | Followed standard Affymetrix protocols
| | Sample_data_processing | The data were normalized using the Bioconductor GCRMA package, generating log2 scale gene expression data. Probe sets with intensities below log2(100) in at least 25% of the samples were excluded, as well as those with variance so small that differential expression was undetectable (i.e., genes for which the interquartile range was <0.5).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vivienne,,Rebel
| | Sample_contact_institute | UTHSCSA
| | Sample_contact_address | 8403 Floyd Curl Drive
| | Sample_contact_city | San Antonio
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 78229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610238/suppl/GSM610238.CEL.gz
| | Sample_series_id | GSE24773
| | Sample_data_row_count | 3127
| | |
|
GSM610239 | GPL1261 |
|
BM stroma Wildtype, biological rep2
|
Primary bone marrow stroma from Wild-type mice
|
tissue: Pimary bone marrow stroma
strain: C57BL/6
genotype: Wild-type
age: 3-4 months
|
Gene expression data from primary bone marrow stroma derived from Wildtype mice
|
| Sample_geo_accession | GSM610239
| | Sample_status | Public on Mar 01 2011
| | Sample_submission_date | Oct 18 2010
| | Sample_last_update_date | Mar 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Bone marrow was plated in M5300 media for 2 weeks to establish a stroma layer. The stroma layer was then irradiated with 1500 cGy and a complete media change was performed.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from primary bone marrow stroma cells using the RNeasy Midi Kit (Qiagen) according the manufacture's instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Followed standard Affymetrix protocols
| | Sample_hyb_protocol | Followed standard Affymetrix protocols
| | Sample_scan_protocol | Followed standard Affymetrix protocols
| | Sample_data_processing | The data were normalized using the Bioconductor GCRMA package, generating log2 scale gene expression data. Probe sets with intensities below log2(100) in at least 25% of the samples were excluded, as well as those with variance so small that differential expression was undetectable (i.e., genes for which the interquartile range was <0.5).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vivienne,,Rebel
| | Sample_contact_institute | UTHSCSA
| | Sample_contact_address | 8403 Floyd Curl Drive
| | Sample_contact_city | San Antonio
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 78229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610239/suppl/GSM610239.CEL.gz
| | Sample_series_id | GSE24773
| | Sample_data_row_count | 3127
| | |
|
GSM610240 | GPL1261 |
|
BM stroma Wildtype, biological rep3
|
Primary bone marrow stroma from Wild-type mice
|
tissue: Pimary bone marrow stroma
strain: C57BL/6
genotype: Wild-type
age: 3-4 months
|
Gene expression data from primary bone marrow stroma derived from Wildtype mice
|
| Sample_geo_accession | GSM610240
| | Sample_status | Public on Mar 01 2011
| | Sample_submission_date | Oct 18 2010
| | Sample_last_update_date | Mar 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Bone marrow was plated in M5300 media for 2 weeks to establish a stroma layer. The stroma layer was then irradiated with 1500 cGy and a complete media change was performed.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from primary bone marrow stroma cells using the RNeasy Midi Kit (Qiagen) according the manufacture's instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Followed standard Affymetrix protocols
| | Sample_hyb_protocol | Followed standard Affymetrix protocols
| | Sample_scan_protocol | Followed standard Affymetrix protocols
| | Sample_data_processing | The data were normalized using the Bioconductor GCRMA package, generating log2 scale gene expression data. Probe sets with intensities below log2(100) in at least 25% of the samples were excluded, as well as those with variance so small that differential expression was undetectable (i.e., genes for which the interquartile range was <0.5).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vivienne,,Rebel
| | Sample_contact_institute | UTHSCSA
| | Sample_contact_address | 8403 Floyd Curl Drive
| | Sample_contact_city | San Antonio
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 78229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610240/suppl/GSM610240.CEL.gz
| | Sample_series_id | GSE24773
| | Sample_data_row_count | 3127
| | |
|
GSM610241 | GPL1261 |
|
BM stroma Wildtype, biological rep4
|
Primary bone marrow stroma from Wild-type mice
|
tissue: Pimary bone marrow stroma
strain: C57BL/6
genotype: Wild-type
age: 3-4 months
|
Gene expression data from primary bone marrow stroma derived from Wildtype mice
|
| Sample_geo_accession | GSM610241
| | Sample_status | Public on Mar 01 2011
| | Sample_submission_date | Oct 18 2010
| | Sample_last_update_date | Mar 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Bone marrow was plated in M5300 media for 2 weeks to establish a stroma layer. The stroma layer was then irradiated with 1500 cGy and a complete media change was performed.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from primary bone marrow stroma cells using the RNeasy Midi Kit (Qiagen) according the manufacture's instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Followed standard Affymetrix protocols
| | Sample_hyb_protocol | Followed standard Affymetrix protocols
| | Sample_scan_protocol | Followed standard Affymetrix protocols
| | Sample_data_processing | The data were normalized using the Bioconductor GCRMA package, generating log2 scale gene expression data. Probe sets with intensities below log2(100) in at least 25% of the samples were excluded, as well as those with variance so small that differential expression was undetectable (i.e., genes for which the interquartile range was <0.5).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vivienne,,Rebel
| | Sample_contact_institute | UTHSCSA
| | Sample_contact_address | 8403 Floyd Curl Drive
| | Sample_contact_city | San Antonio
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 78229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610241/suppl/GSM610241.CEL.gz
| | Sample_series_id | GSE24773
| | Sample_data_row_count | 3127
| | |
|
GSM610242 | GPL1261 |
|
BM stroma Crebbp+/-, biological rep1
|
Primary bone marrow stroma from Crebbp+/- mice
|
tissue: Pimary bone marrow stroma
strain: C57BL/6
genotype: Crebbp+/-
age: 3-4 months
|
Gene expression data from primary bone marrow stroma derived from Crebbp+/- mice
|
| Sample_geo_accession | GSM610242
| | Sample_status | Public on Mar 01 2011
| | Sample_submission_date | Oct 18 2010
| | Sample_last_update_date | Mar 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Bone marrow was plated in M5300 media for 2 weeks to establish a stroma layer. The stroma layer was then irradiated with 1500 cGy and a complete media change was performed.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from primary bone marrow stroma cells using the RNeasy Midi Kit (Qiagen) according the manufacture's instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Followed standard Affymetrix protocols
| | Sample_hyb_protocol | Followed standard Affymetrix protocols
| | Sample_scan_protocol | Followed standard Affymetrix protocols
| | Sample_data_processing | The data were normalized using the Bioconductor GCRMA package, generating log2 scale gene expression data. Probe sets with intensities below log2(100) in at least 25% of the samples were excluded, as well as those with variance so small that differential expression was undetectable (i.e., genes for which the interquartile range was <0.5).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vivienne,,Rebel
| | Sample_contact_institute | UTHSCSA
| | Sample_contact_address | 8403 Floyd Curl Drive
| | Sample_contact_city | San Antonio
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 78229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610242/suppl/GSM610242.CEL.gz
| | Sample_series_id | GSE24773
| | Sample_data_row_count | 3127
| | |
|
GSM610243 | GPL1261 |
|
BM stroma Crebbp+/-, biological rep2
|
Primary bone marrow stroma from Crebbp+/- mice
|
tissue: Pimary bone marrow stroma
strain: C57BL/6
genotype: Crebbp+/-
age: 3-4 months
|
Gene expression data from primary bone marrow stroma derived from Crebbp+/- mice
|
| Sample_geo_accession | GSM610243
| | Sample_status | Public on Mar 01 2011
| | Sample_submission_date | Oct 18 2010
| | Sample_last_update_date | Mar 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Bone marrow was plated in M5300 media for 2 weeks to establish a stroma layer. The stroma layer was then irradiated with 1500 cGy and a complete media change was performed.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from primary bone marrow stroma cells using the RNeasy Midi Kit (Qiagen) according the manufacture's instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Followed standard Affymetrix protocols
| | Sample_hyb_protocol | Followed standard Affymetrix protocols
| | Sample_scan_protocol | Followed standard Affymetrix protocols
| | Sample_data_processing | The data were normalized using the Bioconductor GCRMA package, generating log2 scale gene expression data. Probe sets with intensities below log2(100) in at least 25% of the samples were excluded, as well as those with variance so small that differential expression was undetectable (i.e., genes for which the interquartile range was <0.5).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vivienne,,Rebel
| | Sample_contact_institute | UTHSCSA
| | Sample_contact_address | 8403 Floyd Curl Drive
| | Sample_contact_city | San Antonio
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 78229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610243/suppl/GSM610243.CEL.gz
| | Sample_series_id | GSE24773
| | Sample_data_row_count | 3127
| | |
|
GSM610244 | GPL1261 |
|
BM stroma Crebbp+/-, biological rep3
|
Primary bone marrow stroma from Crebbp+/- mice
|
tissue: Pimary bone marrow stroma
strain: C57BL/6
genotype: Crebbp+/-
age: 3-4 months
|
Gene expression data from primary bone marrow stroma derived from Crebbp+/- mice
|
| Sample_geo_accession | GSM610244
| | Sample_status | Public on Mar 01 2011
| | Sample_submission_date | Oct 18 2010
| | Sample_last_update_date | Mar 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Bone marrow was plated in M5300 media for 2 weeks to establish a stroma layer. The stroma layer was then irradiated with 1500 cGy and a complete media change was performed.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from primary bone marrow stroma cells using the RNeasy Midi Kit (Qiagen) according the manufacture's instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Followed standard Affymetrix protocols
| | Sample_hyb_protocol | Followed standard Affymetrix protocols
| | Sample_scan_protocol | Followed standard Affymetrix protocols
| | Sample_data_processing | The data were normalized using the Bioconductor GCRMA package, generating log2 scale gene expression data. Probe sets with intensities below log2(100) in at least 25% of the samples were excluded, as well as those with variance so small that differential expression was undetectable (i.e., genes for which the interquartile range was <0.5).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vivienne,,Rebel
| | Sample_contact_institute | UTHSCSA
| | Sample_contact_address | 8403 Floyd Curl Drive
| | Sample_contact_city | San Antonio
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 78229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610244/suppl/GSM610244.CEL.gz
| | Sample_series_id | GSE24773
| | Sample_data_row_count | 3127
| | |
|
GSM610245 | GPL1261 |
|
BM stroma Crebbp+/-, biological rep4
|
Primary bone marrow stroma from Crebbp+/- mice
|
tissue: Pimary bone marrow stroma
strain: C57BL/6
genotype: Crebbp+/-
age: 3-4 months
|
Gene expression data from primary bone marrow stroma derived from Crebbp+/- mice
|
| Sample_geo_accession | GSM610245
| | Sample_status | Public on Mar 01 2011
| | Sample_submission_date | Oct 18 2010
| | Sample_last_update_date | Mar 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Bone marrow was plated in M5300 media for 2 weeks to establish a stroma layer. The stroma layer was then irradiated with 1500 cGy and a complete media change was performed.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from primary bone marrow stroma cells using the RNeasy Midi Kit (Qiagen) according the manufacture's instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Followed standard Affymetrix protocols
| | Sample_hyb_protocol | Followed standard Affymetrix protocols
| | Sample_scan_protocol | Followed standard Affymetrix protocols
| | Sample_data_processing | The data were normalized using the Bioconductor GCRMA package, generating log2 scale gene expression data. Probe sets with intensities below log2(100) in at least 25% of the samples were excluded, as well as those with variance so small that differential expression was undetectable (i.e., genes for which the interquartile range was <0.5).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vivienne,,Rebel
| | Sample_contact_institute | UTHSCSA
| | Sample_contact_address | 8403 Floyd Curl Drive
| | Sample_contact_city | San Antonio
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 78229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610245/suppl/GSM610245.CEL.gz
| | Sample_series_id | GSE24773
| | Sample_data_row_count | 3127
| | |
|
GSM610246 | GPL1261 |
|
BM stroma Ep300+/-, biological rep1
|
Primary bone marrow stroma from Ep300+/- mice
|
tissue: Pimary bone marrow stroma
strain: C57BL/6
genotype: Ep300+/-
age: 3-4 months
|
Gene expression data from primary bone marrow stroma derived from Ep300+/- mice
|
| Sample_geo_accession | GSM610246
| | Sample_status | Public on Mar 01 2011
| | Sample_submission_date | Oct 18 2010
| | Sample_last_update_date | Mar 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Bone marrow was plated in M5300 media for 2 weeks to establish a stroma layer. The stroma layer was then irradiated with 1500 cGy and a complete media change was performed.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from primary bone marrow stroma cells using the RNeasy Midi Kit (Qiagen) according the manufacture's instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Followed standard Affymetrix protocols
| | Sample_hyb_protocol | Followed standard Affymetrix protocols
| | Sample_scan_protocol | Followed standard Affymetrix protocols
| | Sample_data_processing | The data were normalized using the Bioconductor GCRMA package, generating log2 scale gene expression data. Probe sets with intensities below log2(100) in at least 25% of the samples were excluded, as well as those with variance so small that differential expression was undetectable (i.e., genes for which the interquartile range was <0.5).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vivienne,,Rebel
| | Sample_contact_institute | UTHSCSA
| | Sample_contact_address | 8403 Floyd Curl Drive
| | Sample_contact_city | San Antonio
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 78229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610246/suppl/GSM610246.CEL.gz
| | Sample_series_id | GSE24773
| | Sample_data_row_count | 3127
| | |
|
GSM610247 | GPL1261 |
|
BM stroma Ep300+/-, biological rep2
|
Primary bone marrow stroma from Ep300+/- mice
|
tissue: Pimary bone marrow stroma
strain: C57BL/6
genotype: Ep300+/-
age: 3-4 months
|
Gene expression data from primary bone marrow stroma derived from Ep300+/- mice
|
| Sample_geo_accession | GSM610247
| | Sample_status | Public on Mar 01 2011
| | Sample_submission_date | Oct 18 2010
| | Sample_last_update_date | Mar 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Bone marrow was plated in M5300 media for 2 weeks to establish a stroma layer. The stroma layer was then irradiated with 1500 cGy and a complete media change was performed.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from primary bone marrow stroma cells using the RNeasy Midi Kit (Qiagen) according the manufacture's instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Followed standard Affymetrix protocols
| | Sample_hyb_protocol | Followed standard Affymetrix protocols
| | Sample_scan_protocol | Followed standard Affymetrix protocols
| | Sample_data_processing | The data were normalized using the Bioconductor GCRMA package, generating log2 scale gene expression data. Probe sets with intensities below log2(100) in at least 25% of the samples were excluded, as well as those with variance so small that differential expression was undetectable (i.e., genes for which the interquartile range was <0.5).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vivienne,,Rebel
| | Sample_contact_institute | UTHSCSA
| | Sample_contact_address | 8403 Floyd Curl Drive
| | Sample_contact_city | San Antonio
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 78229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610247/suppl/GSM610247.CEL.gz
| | Sample_series_id | GSE24773
| | Sample_data_row_count | 3127
| | |
|
GSM610248 | GPL1261 |
|
BM stroma Ep300+/-, biological rep3
|
Primary bone marrow stroma from Ep300+/- mice
|
tissue: Pimary bone marrow stroma
strain: C57BL/6
genotype: Ep300+/-
age: 3-4 months
|
Gene expression data from primary bone marrow stroma derived from Ep300+/- mice
|
| Sample_geo_accession | GSM610248
| | Sample_status | Public on Mar 01 2011
| | Sample_submission_date | Oct 18 2010
| | Sample_last_update_date | Mar 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Bone marrow was plated in M5300 media for 2 weeks to establish a stroma layer. The stroma layer was then irradiated with 1500 cGy and a complete media change was performed.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from primary bone marrow stroma cells using the RNeasy Midi Kit (Qiagen) according the manufacture's instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Followed standard Affymetrix protocols
| | Sample_hyb_protocol | Followed standard Affymetrix protocols
| | Sample_scan_protocol | Followed standard Affymetrix protocols
| | Sample_data_processing | The data were normalized using the Bioconductor GCRMA package, generating log2 scale gene expression data. Probe sets with intensities below log2(100) in at least 25% of the samples were excluded, as well as those with variance so small that differential expression was undetectable (i.e., genes for which the interquartile range was <0.5).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vivienne,,Rebel
| | Sample_contact_institute | UTHSCSA
| | Sample_contact_address | 8403 Floyd Curl Drive
| | Sample_contact_city | San Antonio
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 78229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610248/suppl/GSM610248.CEL.gz
| | Sample_series_id | GSE24773
| | Sample_data_row_count | 3127
| | |
|
GSM610249 | GPL1261 |
|
BM stroma Ep300+/-, biological rep4
|
Primary bone marrow stroma from Ep300+/- mice
|
tissue: Pimary bone marrow stroma
strain: C57BL/6
genotype: Ep300+/-
age: 3-4 months
|
Gene expression data from primary bone marrow stroma derived from Ep300+/- mice
|
| Sample_geo_accession | GSM610249
| | Sample_status | Public on Mar 01 2011
| | Sample_submission_date | Oct 18 2010
| | Sample_last_update_date | Mar 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Bone marrow was plated in M5300 media for 2 weeks to establish a stroma layer. The stroma layer was then irradiated with 1500 cGy and a complete media change was performed.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from primary bone marrow stroma cells using the RNeasy Midi Kit (Qiagen) according the manufacture's instruction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Followed standard Affymetrix protocols
| | Sample_hyb_protocol | Followed standard Affymetrix protocols
| | Sample_scan_protocol | Followed standard Affymetrix protocols
| | Sample_data_processing | The data were normalized using the Bioconductor GCRMA package, generating log2 scale gene expression data. Probe sets with intensities below log2(100) in at least 25% of the samples were excluded, as well as those with variance so small that differential expression was undetectable (i.e., genes for which the interquartile range was <0.5).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vivienne,,Rebel
| | Sample_contact_institute | UTHSCSA
| | Sample_contact_address | 8403 Floyd Curl Drive
| | Sample_contact_city | San Antonio
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 78229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610249/suppl/GSM610249.CEL.gz
| | Sample_series_id | GSE24773
| | Sample_data_row_count | 3127
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