Search results for the GEO ID: GSE24793 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM610524 | GPL1261 |
|
Neurons at 6h_T3 treatment
|
Cerebellar neurons from newborns, treated 6 hours with thyroid hormone T3
|
tissue: Primary culture of cerebellar neurons
age: Prepared from P4-P7 pups
genotype: Wild-type
|
Gene expression data from cerebellar neurons cultured 6h with T3
|
Sample_geo_accession | GSM610524
| Sample_status | Public on Mar 30 2012
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Mar 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Cultures were either treated with 10-7 M thyroid hormone (T3) for 6, 16, 24 or 48 hours or left untreated the same amount of time as control cultures.
| Sample_growth_protocol_ch1 | Cerebellar neurons were retrieved from newborns by mechanic dissociation, plated in serum-free medium for 48 hours and then treated
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen RNeasy micro-kit and quality was assessed by Agilent BioAnalyzer
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cDNA were prepared according to the two-cycle cDNA synthesis Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChip were scanned using an Affymetrix Genechip 3000 7G scanner.
| Sample_data_processing | Data were analyzed using Affymetrix GeneChip Operating Software (GCOS) and Microarray Suite version 5.0 (MAS5.0) softwares and results were pairwise compared to extract up- and down-regulated genes.
| Sample_platform_id | GPL1261
| Sample_contact_name | Fabrice,,Chatonnet
| Sample_contact_email | fabrice.chatonnet@ens-lyon.org
| Sample_contact_phone | +33 4 2673 1333
| Sample_contact_fax | +33 4 2673 1371
| Sample_contact_laboratory | Neurodevelopment
| Sample_contact_institute | Institut de Génomique Fonctionelle de Lyon
| Sample_contact_address | 46 Allée d'Italie
| Sample_contact_city | Lyon
| Sample_contact_zip/postal_code | 69364
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610524/suppl/GSM610524.CEL.gz
| Sample_series_id | GSE24793
| Sample_data_row_count | 45101
| |
|
GSM610525 | GPL1261 |
|
Neurons at 6h_untreated
|
Cerebellar neurons from newborns, untreated, cultured for 6 hours
|
tissue: Primary culture of cerebellar neurons
age: Prepared from P4-P7 pups
genotype: Wild-type
|
Gene expression data from cerebellar neurons culture 6h, untreated
|
Sample_geo_accession | GSM610525
| Sample_status | Public on Mar 30 2012
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Mar 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Cultures were either treated with 10-7 M thyroid hormone (T3) for 6, 16, 24 or 48 hours or left untreated the same amount of time as control cultures.
| Sample_growth_protocol_ch1 | Cerebellar neurons were retrieved from newborns by mechanic dissociation, plated in serum-free medium for 48 hours and then treated
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen RNeasy micro-kit and quality was assessed by Agilent BioAnalyzer
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cDNA were prepared according to the two-cycle cDNA synthesis Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChip were scanned using an Affymetrix Genechip 3000 7G scanner.
| Sample_data_processing | Data were analyzed using Affymetrix GeneChip Operating Software (GCOS) and Microarray Suite version 5.0 (MAS5.0) softwares and results were pairwise compared to extract up- and down-regulated genes.
| Sample_platform_id | GPL1261
| Sample_contact_name | Fabrice,,Chatonnet
| Sample_contact_email | fabrice.chatonnet@ens-lyon.org
| Sample_contact_phone | +33 4 2673 1333
| Sample_contact_fax | +33 4 2673 1371
| Sample_contact_laboratory | Neurodevelopment
| Sample_contact_institute | Institut de Génomique Fonctionelle de Lyon
| Sample_contact_address | 46 Allée d'Italie
| Sample_contact_city | Lyon
| Sample_contact_zip/postal_code | 69364
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610525/suppl/GSM610525.CEL.gz
| Sample_series_id | GSE24793
| Sample_data_row_count | 45101
| |
|
GSM610526 | GPL1261 |
|
Neurons at 16h_T3 treatment
|
Cerebellar neurons from newborns, treated 16 hours with thyroid hormone T3
|
tissue: Primary culture of cerebellar neurons
age: Prepared from P4-P7 pups
genotype: Wild-type
|
Gene expression data from cerebellar neurons cultured 16h with T3
|
Sample_geo_accession | GSM610526
| Sample_status | Public on Mar 30 2012
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Mar 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Cultures were either treated with 10-7 M thyroid hormone (T3) for 6, 16, 24 or 48 hours or left untreated the same amount of time as control cultures.
| Sample_growth_protocol_ch1 | Cerebellar neurons were retrieved from newborns by mechanic dissociation, plated in serum-free medium for 48 hours and then treated
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen RNeasy micro-kit and quality was assessed by Agilent BioAnalyzer
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cDNA were prepared according to the two-cycle cDNA synthesis Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChip were scanned using an Affymetrix Genechip 3000 7G scanner.
| Sample_data_processing | Data were analyzed using Affymetrix GeneChip Operating Software (GCOS) and Microarray Suite version 5.0 (MAS5.0) softwares and results were pairwise compared to extract up- and down-regulated genes.
| Sample_platform_id | GPL1261
| Sample_contact_name | Fabrice,,Chatonnet
| Sample_contact_email | fabrice.chatonnet@ens-lyon.org
| Sample_contact_phone | +33 4 2673 1333
| Sample_contact_fax | +33 4 2673 1371
| Sample_contact_laboratory | Neurodevelopment
| Sample_contact_institute | Institut de Génomique Fonctionelle de Lyon
| Sample_contact_address | 46 Allée d'Italie
| Sample_contact_city | Lyon
| Sample_contact_zip/postal_code | 69364
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610526/suppl/GSM610526.CEL.gz
| Sample_series_id | GSE24793
| Sample_data_row_count | 45101
| |
|
GSM610527 | GPL1261 |
|
Neurons at 16h_untreated
|
Cerebellar neurons from newborns, untreated, cultured for 16 hours
|
tissue: Primary culture of cerebellar neurons
age: Prepared from P4-P7 pups
genotype: Wild-type
|
Gene expression data from cerebellar neurons culture 16h, untreated
|
Sample_geo_accession | GSM610527
| Sample_status | Public on Mar 30 2012
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Mar 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Cultures were either treated with 10-7 M thyroid hormone (T3) for 6, 16, 24 or 48 hours or left untreated the same amount of time as control cultures.
| Sample_growth_protocol_ch1 | Cerebellar neurons were retrieved from newborns by mechanic dissociation, plated in serum-free medium for 48 hours and then treated
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen RNeasy micro-kit and quality was assessed by Agilent BioAnalyzer
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cDNA were prepared according to the two-cycle cDNA synthesis Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChip were scanned using an Affymetrix Genechip 3000 7G scanner.
| Sample_data_processing | Data were analyzed using Affymetrix GeneChip Operating Software (GCOS) and Microarray Suite version 5.0 (MAS5.0) softwares and results were pairwise compared to extract up- and down-regulated genes.
| Sample_platform_id | GPL1261
| Sample_contact_name | Fabrice,,Chatonnet
| Sample_contact_email | fabrice.chatonnet@ens-lyon.org
| Sample_contact_phone | +33 4 2673 1333
| Sample_contact_fax | +33 4 2673 1371
| Sample_contact_laboratory | Neurodevelopment
| Sample_contact_institute | Institut de Génomique Fonctionelle de Lyon
| Sample_contact_address | 46 Allée d'Italie
| Sample_contact_city | Lyon
| Sample_contact_zip/postal_code | 69364
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610527/suppl/GSM610527.CEL.gz
| Sample_series_id | GSE24793
| Sample_data_row_count | 45101
| |
|
GSM610528 | GPL1261 |
|
Neurons at 24h_T3 treatment
|
Cerebellar neurons from newborns, treated 24 hours with thyroid hormone T3
|
tissue: Primary culture of cerebellar neurons
age: Prepared from P4-P7 pups
genotype: Wild-type
|
Gene expression data from cerebellar neurons cultured 24h with T3
|
Sample_geo_accession | GSM610528
| Sample_status | Public on Mar 30 2012
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Mar 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Cultures were either treated with 10-7 M thyroid hormone (T3) for 6, 16, 24 or 48 hours or left untreated the same amount of time as control cultures.
| Sample_growth_protocol_ch1 | Cerebellar neurons were retrieved from newborns by mechanic dissociation, plated in serum-free medium for 48 hours and then treated
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen RNeasy micro-kit and quality was assessed by Agilent BioAnalyzer
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cDNA were prepared according to the two-cycle cDNA synthesis Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChip were scanned using an Affymetrix Genechip 3000 7G scanner.
| Sample_data_processing | Data were analyzed using Affymetrix GeneChip Operating Software (GCOS) and Microarray Suite version 5.0 (MAS5.0) softwares and results were pairwise compared to extract up- and down-regulated genes.
| Sample_platform_id | GPL1261
| Sample_contact_name | Fabrice,,Chatonnet
| Sample_contact_email | fabrice.chatonnet@ens-lyon.org
| Sample_contact_phone | +33 4 2673 1333
| Sample_contact_fax | +33 4 2673 1371
| Sample_contact_laboratory | Neurodevelopment
| Sample_contact_institute | Institut de Génomique Fonctionelle de Lyon
| Sample_contact_address | 46 Allée d'Italie
| Sample_contact_city | Lyon
| Sample_contact_zip/postal_code | 69364
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610528/suppl/GSM610528.CEL.gz
| Sample_series_id | GSE24793
| Sample_data_row_count | 45101
| |
|
GSM610529 | GPL1261 |
|
Neurons at 24h_untreated
|
Cerebellar neurons from newborns, untreated, cultured for 24 hours
|
tissue: Primary culture of cerebellar neurons
age: Prepared from P4-P7 pups
genotype: Wild-type
|
Gene expression data from cerebellar neurons culture 24h, untreated
|
Sample_geo_accession | GSM610529
| Sample_status | Public on Mar 30 2012
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Mar 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Cultures were either treated with 10-7 M thyroid hormone (T3) for 6, 16, 24 or 48 hours or left untreated the same amount of time as control cultures.
| Sample_growth_protocol_ch1 | Cerebellar neurons were retrieved from newborns by mechanic dissociation, plated in serum-free medium for 48 hours and then treated
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen RNeasy micro-kit and quality was assessed by Agilent BioAnalyzer
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cDNA were prepared according to the two-cycle cDNA synthesis Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChip were scanned using an Affymetrix Genechip 3000 7G scanner.
| Sample_data_processing | Data were analyzed using Affymetrix GeneChip Operating Software (GCOS) and Microarray Suite version 5.0 (MAS5.0) softwares and results were pairwise compared to extract up- and down-regulated genes.
| Sample_platform_id | GPL1261
| Sample_contact_name | Fabrice,,Chatonnet
| Sample_contact_email | fabrice.chatonnet@ens-lyon.org
| Sample_contact_phone | +33 4 2673 1333
| Sample_contact_fax | +33 4 2673 1371
| Sample_contact_laboratory | Neurodevelopment
| Sample_contact_institute | Institut de Génomique Fonctionelle de Lyon
| Sample_contact_address | 46 Allée d'Italie
| Sample_contact_city | Lyon
| Sample_contact_zip/postal_code | 69364
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610529/suppl/GSM610529.CEL.gz
| Sample_series_id | GSE24793
| Sample_data_row_count | 45101
| |
|
GSM610530 | GPL1261 |
|
Neurons at 48h_T3 treatment
|
Cerebellar neurons from newborns, treated 48 hours with thyroid hormone T3
|
tissue: Primary culture of cerebellar neurons
age: Prepared from P4-P7 pups
genotype: Wild-type
|
Gene expression data from cerebellar neurons cultured 48h with T3
|
Sample_geo_accession | GSM610530
| Sample_status | Public on Mar 30 2012
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Mar 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Cultures were either treated with 10-7 M thyroid hormone (T3) for 6, 16, 24 or 48 hours or left untreated the same amount of time as control cultures.
| Sample_growth_protocol_ch1 | Cerebellar neurons were retrieved from newborns by mechanic dissociation, plated in serum-free medium for 48 hours and then treated
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen RNeasy micro-kit and quality was assessed by Agilent BioAnalyzer
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cDNA were prepared according to the two-cycle cDNA synthesis Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChip were scanned using an Affymetrix Genechip 3000 7G scanner.
| Sample_data_processing | Data were analyzed using Affymetrix GeneChip Operating Software (GCOS) and Microarray Suite version 5.0 (MAS5.0) softwares and results were pairwise compared to extract up- and down-regulated genes.
| Sample_platform_id | GPL1261
| Sample_contact_name | Fabrice,,Chatonnet
| Sample_contact_email | fabrice.chatonnet@ens-lyon.org
| Sample_contact_phone | +33 4 2673 1333
| Sample_contact_fax | +33 4 2673 1371
| Sample_contact_laboratory | Neurodevelopment
| Sample_contact_institute | Institut de Génomique Fonctionelle de Lyon
| Sample_contact_address | 46 Allée d'Italie
| Sample_contact_city | Lyon
| Sample_contact_zip/postal_code | 69364
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610530/suppl/GSM610530.CEL.gz
| Sample_series_id | GSE24793
| Sample_data_row_count | 45101
| |
|
GSM610531 | GPL1261 |
|
Neurons at 48h_untreated
|
Cerebellar neurons from newborns, untreated, cultured for 48 hours
|
tissue: Primary culture of cerebellar neurons
age: Prepared from P4-P7 pups
genotype: Wild-type
|
Gene expression data from cerebellar neurons culture 48h, untreated
|
Sample_geo_accession | GSM610531
| Sample_status | Public on Mar 30 2012
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Mar 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Cultures were either treated with 10-7 M thyroid hormone (T3) for 6, 16, 24 or 48 hours or left untreated the same amount of time as control cultures.
| Sample_growth_protocol_ch1 | Cerebellar neurons were retrieved from newborns by mechanic dissociation, plated in serum-free medium for 48 hours and then treated
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen RNeasy micro-kit and quality was assessed by Agilent BioAnalyzer
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cDNA were prepared according to the two-cycle cDNA synthesis Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChip were scanned using an Affymetrix Genechip 3000 7G scanner.
| Sample_data_processing | Data were analyzed using Affymetrix GeneChip Operating Software (GCOS) and Microarray Suite version 5.0 (MAS5.0) softwares and results were pairwise compared to extract up- and down-regulated genes.
| Sample_platform_id | GPL1261
| Sample_contact_name | Fabrice,,Chatonnet
| Sample_contact_email | fabrice.chatonnet@ens-lyon.org
| Sample_contact_phone | +33 4 2673 1333
| Sample_contact_fax | +33 4 2673 1371
| Sample_contact_laboratory | Neurodevelopment
| Sample_contact_institute | Institut de Génomique Fonctionelle de Lyon
| Sample_contact_address | 46 Allée d'Italie
| Sample_contact_city | Lyon
| Sample_contact_zip/postal_code | 69364
| Sample_contact_country | France
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610531/suppl/GSM610531.CEL.gz
| Sample_series_id | GSE24793
| Sample_data_row_count | 45101
| |
|
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