Search results for the GEO ID: GSE24806  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM610740 | GPL96 |
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SBSR-AKS cells, growing in suspension
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Ewing tumor cell line
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cell line: SBSR-AKS
genotype: EWS-FLI1 translocation type 1
growth conditions: SBSR-AKS cells growing in suspension
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Gene expression data from established Ewing tumor cells after transfection with siRNAs
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| Sample_geo_accession | GSM610740
| | Sample_status | Public on Sep 30 2011
| | Sample_submission_date | Oct 19 2010
| | Sample_last_update_date | Sep 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Ewing tumor cell lines were grown under standard conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on HG_U133A Microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Expression Console 1.1 using the MAS5.0 algorithm and Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Martin,Sebastian,Staege
| | Sample_contact_email | martin.staege@medizin.uni-halle.de
| | Sample_contact_phone | +49-345-5577280
| | Sample_contact_laboratory | Children's Cancer Reserach Center
| | Sample_contact_department | Universitätsklinik u. Poliklinik für Kinder- u. Jugendmedizin
| | Sample_contact_institute | Martin-Luther-University Halle-Wittenberg
| | Sample_contact_address | Ernst-Grube-Str. 40
| | Sample_contact_city | Halle (Saale)
| | Sample_contact_state | Sachsen-Anhalt
| | Sample_contact_zip/postal_code | 06120
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610740/suppl/GSM610740_IV113005_01x.CEL.gz
| | Sample_series_id | GSE24806
| | Sample_data_row_count | 22283
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GSM610741 | GPL96 |
|
SBSR-AKS cells, growing adherent to the culture dish
|
Ewing tumor cell line
|
cell line: SBSR-AKS
genotype: EWS-FLI1 translocation type 1
growth conditions: SBSR-AKS cells growing adherent to the culture dish
|
Gene expression data from established Ewing tumor cells after transfection with siRNAs
|
| Sample_geo_accession | GSM610741
| | Sample_status | Public on Sep 30 2011
| | Sample_submission_date | Oct 19 2010
| | Sample_last_update_date | Sep 30 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Ewing tumor cell lines were grown under standard conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on HG_U133A Microarrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Expression Console 1.1 using the MAS5.0 algorithm and Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Martin,Sebastian,Staege
| | Sample_contact_email | martin.staege@medizin.uni-halle.de
| | Sample_contact_phone | +49-345-5577280
| | Sample_contact_laboratory | Children's Cancer Reserach Center
| | Sample_contact_department | Universitätsklinik u. Poliklinik für Kinder- u. Jugendmedizin
| | Sample_contact_institute | Martin-Luther-University Halle-Wittenberg
| | Sample_contact_address | Ernst-Grube-Str. 40
| | Sample_contact_city | Halle (Saale)
| | Sample_contact_state | Sachsen-Anhalt
| | Sample_contact_zip/postal_code | 06120
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610741/suppl/GSM610741_IV113005_02x.CEL.gz
| | Sample_series_id | GSE24806
| | Sample_data_row_count | 22283
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