Search results for the GEO ID: GSE24813 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM610739 | GPL1261 |
|
BCL6 WT chip 1 untreated
|
bone marrow, BCL6 WT, untreated
|
strain: C57Bl6/129SV
age: 4 weeks
cell culture: BCR-ABL1 transformed myeloid cells
disease state: BCR-ABL1-driven CML
genotype/variation: BCL6 WT
agent: untreated
|
|
Sample_geo_accession | GSM610739
| Sample_status | Public on Aug 24 2011
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Aug 24 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen_RNeasy_Kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual) was used. Complete protocal can be found manufacturer's web site.
| Sample_hyb_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_scan_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_data_processing | GCOS 1.3
| Sample_platform_id | GPL1261
| Sample_contact_name | Markus,,Müschen
| Sample_contact_email | mmuschen@chla.usc.edu
| Sample_contact_phone | + 1 323 361 5592
| Sample_contact_fax | +1 323 361 1516
| Sample_contact_laboratory | Müschen Lab
| Sample_contact_department | Childrens Hospital Los Angeles
| Sample_contact_institute | University of Southern California
| Sample_contact_address | 4650 Sunset Blvd
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90027
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.lymphocytes.de/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610739/suppl/GSM610739.CEL.gz
| Sample_series_id | GSE24813
| Sample_data_row_count | 45101
| |
|
GSM610742 | GPL1261 |
|
BCL6 WT chip 2 untreated
|
bone marrow, BCL6 WT, untreated
|
strain: C57Bl6/129SV
age: 4 weeks
cell culture: BCR-ABL1 transformed myeloid cells
disease state: BCR-ABL1-driven CML
genotype/variation: BCL6 WT
agent: untreated
|
|
Sample_geo_accession | GSM610742
| Sample_status | Public on Aug 24 2011
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Aug 24 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen_RNeasy_Kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual) was used. Complete protocal can be found manufacturer's web site.
| Sample_hyb_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_scan_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_data_processing | GCOS 1.3
| Sample_platform_id | GPL1261
| Sample_contact_name | Markus,,Müschen
| Sample_contact_email | mmuschen@chla.usc.edu
| Sample_contact_phone | + 1 323 361 5592
| Sample_contact_fax | +1 323 361 1516
| Sample_contact_laboratory | Müschen Lab
| Sample_contact_department | Childrens Hospital Los Angeles
| Sample_contact_institute | University of Southern California
| Sample_contact_address | 4650 Sunset Blvd
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90027
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.lymphocytes.de/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610742/suppl/GSM610742.CEL.gz
| Sample_series_id | GSE24813
| Sample_data_row_count | 45101
| |
|
GSM610776 | GPL1261 |
|
BCL6 WT chip 1 Imatinib treated
|
bone marrow, BCL6 WT, Imatinib treated
|
strain: C57Bl6/129SV
age: 4 weeks
cell culture: BCR-ABL1 transformed myeloid cells
disease state: BCR-ABL1-driven CML
genotype/variation: BCL6 WT
agent: Imatinib
|
BCL6 WT CML cells were incubated with 10 µM STI571 (Imatinib) for 16 hours.
|
Sample_geo_accession | GSM610776
| Sample_status | Public on Aug 24 2011
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Aug 24 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen_RNeasy_Kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual) was used. Complete protocal can be found manufacturer's web site.
| Sample_hyb_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_scan_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_data_processing | GCOS 1.3
| Sample_platform_id | GPL1261
| Sample_contact_name | Markus,,Müschen
| Sample_contact_email | mmuschen@chla.usc.edu
| Sample_contact_phone | + 1 323 361 5592
| Sample_contact_fax | +1 323 361 1516
| Sample_contact_laboratory | Müschen Lab
| Sample_contact_department | Childrens Hospital Los Angeles
| Sample_contact_institute | University of Southern California
| Sample_contact_address | 4650 Sunset Blvd
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90027
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.lymphocytes.de/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610776/suppl/GSM610776.CEL.gz
| Sample_series_id | GSE24813
| Sample_data_row_count | 45101
| |
|
GSM610777 | GPL1261 |
|
BCL6 WT chip 2 Imatinib treated
|
bone marrow, BCL6 WT, Imatinib treated
|
strain: C57Bl6/129SV
age: 4 weeks
cell culture: BCR-ABL1 transformed myeloid cells
disease state: BCR-ABL1-driven CML
genotype/variation: BCL6 WT
agent: Imatinib
|
BCL6 WT CML cells were incubated with 10 µM STI571 (Imatinib) for 16 hours.
|
Sample_geo_accession | GSM610777
| Sample_status | Public on Aug 24 2011
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Aug 24 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen_RNeasy_Kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual) was used. Complete protocal can be found manufacturer's web site.
| Sample_hyb_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_scan_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_data_processing | GCOS 1.3
| Sample_platform_id | GPL1261
| Sample_contact_name | Markus,,Müschen
| Sample_contact_email | mmuschen@chla.usc.edu
| Sample_contact_phone | + 1 323 361 5592
| Sample_contact_fax | +1 323 361 1516
| Sample_contact_laboratory | Müschen Lab
| Sample_contact_department | Childrens Hospital Los Angeles
| Sample_contact_institute | University of Southern California
| Sample_contact_address | 4650 Sunset Blvd
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90027
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.lymphocytes.de/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610777/suppl/GSM610777.CEL.gz
| Sample_series_id | GSE24813
| Sample_data_row_count | 45101
| |
|
GSM610842 | GPL1261 |
|
BCL6 WT chip 1 Imatinib/RI-BPI treated
|
bone marrow, BCL6 WT, Imatinib/RI-BPI treated
|
strain: C57Bl6/129SV
age: 4 weeks
cell culture: BCR-ABL1 transformed myeloid cells
disease state: BCR-ABL1-driven CML
genotype/variation: BCL6 WT
agent: Imatinib/RI-BPI
|
BCL6 WT CML cells were incubated with 10 µM STI571 (Imatinib) and 20 µM RI-BPI for 16 hours.
|
Sample_geo_accession | GSM610842
| Sample_status | Public on Aug 24 2011
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Aug 24 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen_RNeasy_Kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual) was used. Complete protocal can be found manufacturer's web site.
| Sample_hyb_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_scan_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_data_processing | GCOS 1.3
| Sample_platform_id | GPL1261
| Sample_contact_name | Markus,,Müschen
| Sample_contact_email | mmuschen@chla.usc.edu
| Sample_contact_phone | + 1 323 361 5592
| Sample_contact_fax | +1 323 361 1516
| Sample_contact_laboratory | Müschen Lab
| Sample_contact_department | Childrens Hospital Los Angeles
| Sample_contact_institute | University of Southern California
| Sample_contact_address | 4650 Sunset Blvd
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90027
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.lymphocytes.de/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610842/suppl/GSM610842.CEL.gz
| Sample_series_id | GSE24813
| Sample_data_row_count | 45101
| |
|
GSM610857 | GPL1261 |
|
BCL6 WT chip 2 Imatinib/RI-BPI treated
|
bone marrow, BCL6 WT, Imatinib/RI-BPI treated
|
strain: C57Bl6/129SV
age: 4 weeks
cell culture: BCR-ABL1 transformed myeloid cells
disease state: BCR-ABL1-driven CML
genotype/variation: BCL6 WT
agent: Imatinib/RI-BPI
|
BCL6 WT CML cells were incubated with 10 µM STI571 (Imatinib) and 20 µM RI-BPI for 16 hours.
|
Sample_geo_accession | GSM610857
| Sample_status | Public on Aug 24 2011
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Aug 24 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen_RNeasy_Kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual) was used. Complete protocal can be found manufacturer's web site.
| Sample_hyb_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_scan_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_data_processing | GCOS 1.3
| Sample_platform_id | GPL1261
| Sample_contact_name | Markus,,Müschen
| Sample_contact_email | mmuschen@chla.usc.edu
| Sample_contact_phone | + 1 323 361 5592
| Sample_contact_fax | +1 323 361 1516
| Sample_contact_laboratory | Müschen Lab
| Sample_contact_department | Childrens Hospital Los Angeles
| Sample_contact_institute | University of Southern California
| Sample_contact_address | 4650 Sunset Blvd
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90027
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.lymphocytes.de/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610857/suppl/GSM610857.CEL.gz
| Sample_series_id | GSE24813
| Sample_data_row_count | 45101
| |
|
GSM610858 | GPL1261 |
|
BCL6 KO chip 1 untreated
|
bone marrow, BCL6 KO, untreated
|
strain: C57Bl6/129SV
age: 4 weeks
cell culture: BCR-ABL1 transformed myeloid cells
disease state: BCR-ABL1-driven CML
genotype/variation: BCL6 KO
agent: untreated
|
|
Sample_geo_accession | GSM610858
| Sample_status | Public on Aug 24 2011
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Aug 24 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen_RNeasy_Kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual) was used. Complete protocal can be found manufacturer's web site.
| Sample_hyb_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_scan_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_data_processing | GCOS 1.3
| Sample_platform_id | GPL1261
| Sample_contact_name | Markus,,Müschen
| Sample_contact_email | mmuschen@chla.usc.edu
| Sample_contact_phone | + 1 323 361 5592
| Sample_contact_fax | +1 323 361 1516
| Sample_contact_laboratory | Müschen Lab
| Sample_contact_department | Childrens Hospital Los Angeles
| Sample_contact_institute | University of Southern California
| Sample_contact_address | 4650 Sunset Blvd
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90027
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.lymphocytes.de/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610858/suppl/GSM610858.CEL.gz
| Sample_series_id | GSE24813
| Sample_data_row_count | 45101
| |
|
GSM610859 | GPL1261 |
|
BCL6 KO chip 2 untreated
|
bone marrow, BCL6 KO, untreated
|
strain: C57Bl6/129SV
age: 4 weeks
cell culture: BCR-ABL1 transformed myeloid cells
disease state: BCR-ABL1-driven CML
genotype/variation: BCL6 KO
agent: untreated
|
|
Sample_geo_accession | GSM610859
| Sample_status | Public on Aug 24 2011
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Aug 24 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen_RNeasy_Kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual) was used. Complete protocal can be found manufacturer's web site.
| Sample_hyb_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_scan_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_data_processing | GCOS 1.3
| Sample_platform_id | GPL1261
| Sample_contact_name | Markus,,Müschen
| Sample_contact_email | mmuschen@chla.usc.edu
| Sample_contact_phone | + 1 323 361 5592
| Sample_contact_fax | +1 323 361 1516
| Sample_contact_laboratory | Müschen Lab
| Sample_contact_department | Childrens Hospital Los Angeles
| Sample_contact_institute | University of Southern California
| Sample_contact_address | 4650 Sunset Blvd
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90027
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.lymphocytes.de/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610859/suppl/GSM610859.CEL.gz
| Sample_series_id | GSE24813
| Sample_data_row_count | 45101
| |
|
GSM610860 | GPL1261 |
|
BCL6 KO chip 1 Imatinib treated
|
bone marrow, BCL6 KO, Imatinib treated
|
strain: C57Bl6/129SV
age: 4 weeks
cell culture: BCR-ABL1 transformed myeloid cells
disease state: BCR-ABL1-driven CML
genotype/variation: BCL6 KO
agent: Imatinib
|
BCL6 KOCML cells were incubated with 10 µM STI571 (Imatinib) for 16 hours.
|
Sample_geo_accession | GSM610860
| Sample_status | Public on Aug 24 2011
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Aug 24 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen_RNeasy_Kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual) was used. Complete protocal can be found manufacturer's web site.
| Sample_hyb_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_scan_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_data_processing | GCOS 1.3
| Sample_platform_id | GPL1261
| Sample_contact_name | Markus,,Müschen
| Sample_contact_email | mmuschen@chla.usc.edu
| Sample_contact_phone | + 1 323 361 5592
| Sample_contact_fax | +1 323 361 1516
| Sample_contact_laboratory | Müschen Lab
| Sample_contact_department | Childrens Hospital Los Angeles
| Sample_contact_institute | University of Southern California
| Sample_contact_address | 4650 Sunset Blvd
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90027
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.lymphocytes.de/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610860/suppl/GSM610860.CEL.gz
| Sample_series_id | GSE24813
| Sample_data_row_count | 45101
| |
|
GSM610861 | GPL1261 |
|
BCL6 KO chip 2 Imatinib treated
|
bone marrow, BCL6 KO, Imatinib treated
|
strain: C57Bl6/129SV
age: 4 weeks
cell culture: BCR-ABL1 transformed myeloid cells
disease state: BCR-ABL1-driven CML
genotype/variation: BCL6 KO
agent: Imatinib
|
BCL6 KOCML cells were incubated with 10 µM STI571 (Imatinib) for 16 hours.
|
Sample_geo_accession | GSM610861
| Sample_status | Public on Aug 24 2011
| Sample_submission_date | Oct 19 2010
| Sample_last_update_date | Aug 24 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen_RNeasy_Kit
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocols (Affymetrix GeneChip Expression Analysis Technical Manual) was used. Complete protocal can be found manufacturer's web site.
| Sample_hyb_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_scan_protocol | Standard Affymetrix protocols (see GeneChip Expression Analysis Technical Manual)
| Sample_data_processing | GCOS 1.3
| Sample_platform_id | GPL1261
| Sample_contact_name | Markus,,Müschen
| Sample_contact_email | mmuschen@chla.usc.edu
| Sample_contact_phone | + 1 323 361 5592
| Sample_contact_fax | +1 323 361 1516
| Sample_contact_laboratory | Müschen Lab
| Sample_contact_department | Childrens Hospital Los Angeles
| Sample_contact_institute | University of Southern California
| Sample_contact_address | 4650 Sunset Blvd
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90027
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.lymphocytes.de/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM610nnn/GSM610861/suppl/GSM610861.CEL.gz
| Sample_series_id | GSE24813
| Sample_data_row_count | 45101
| |
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