Search results for the GEO ID: GSE24824 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM611008 | GPL570 |
|
control treated liver metastasis sample R1
|
Total RNA of control treated liver metastasis
|
treatment: Control
|
|
Sample_geo_accession | GSM611008
| Sample_status | Public on Oct 21 2010
| Sample_submission_date | Oct 20 2010
| Sample_last_update_date | Oct 20 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | In vivo liver metastasis model treated with either anti-miR-182 or control administered intraperitoneal twice weekly over 4 weeks.
| Sample_growth_protocol_ch1 | Human melanoma cells A375 metastatic to liver treated with either control or anti-miR-182 using a mouse model.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy micro-elute columns (QIAGEN), according to manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 100 ng of total cellular RNA was converted to cDNA/cRNA and labeled using the Affymetrix 3'IVT Express Kit.
| Sample_hyb_protocol | 10 micrograms of cRNA generated by the IVT procedure was hybridized for 16 hr to the Affymetrix array according to the manufacturer's manual. Genechips® were processed using protocol EukGE_WS2v4 450 for Genechip® fluidics station 450.
| Sample_scan_protocol | Affymetrix GeneArray scanner 7G
| Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was done by the RMA algorithm using GeneSpring GX11 program. No further adjustments were made to the data in the table.
| Sample_platform_id | GPL570
| Sample_contact_name | Jiri,,Zavadil
| Sample_contact_email | jiri.zavadil@med.nyu.edu
| Sample_contact_phone | 212-263-8048
| Sample_contact_department | Pathology
| Sample_contact_institute | NYU SoM
| Sample_contact_address |
| Sample_contact_city | New York
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 10016
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM611nnn/GSM611008/suppl/GSM611008.CEL.gz
| Sample_series_id | GSE24824
| Sample_data_row_count | 54675
| |
|
GSM611009 | GPL570 |
|
control treated liver metastasis sample R2
|
Total RNA of control treated liver metastasis
|
treatment: Control
|
|
Sample_geo_accession | GSM611009
| Sample_status | Public on Oct 21 2010
| Sample_submission_date | Oct 20 2010
| Sample_last_update_date | Oct 20 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | In vivo liver metastasis model treated with either anti-miR-182 or control administered intraperitoneal twice weekly over 4 weeks.
| Sample_growth_protocol_ch1 | Human melanoma cells A375 metastatic to liver treated with either control or anti-miR-182 using a mouse model.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy micro-elute columns (QIAGEN), according to manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 100 ng of total cellular RNA was converted to cDNA/cRNA and labeled using the Affymetrix 3'IVT Express Kit.
| Sample_hyb_protocol | 10 micrograms of cRNA generated by the IVT procedure was hybridized for 16 hr to the Affymetrix array according to the manufacturer's manual. Genechips® were processed using protocol EukGE_WS2v4 450 for Genechip® fluidics station 450.
| Sample_scan_protocol | Affymetrix GeneArray scanner 7G
| Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was done by the RMA algorithm using GeneSpring GX11 program. No further adjustments were made to the data in the table.
| Sample_platform_id | GPL570
| Sample_contact_name | Jiri,,Zavadil
| Sample_contact_email | jiri.zavadil@med.nyu.edu
| Sample_contact_phone | 212-263-8048
| Sample_contact_department | Pathology
| Sample_contact_institute | NYU SoM
| Sample_contact_address |
| Sample_contact_city | New York
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 10016
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM611nnn/GSM611009/suppl/GSM611009.CEL.gz
| Sample_series_id | GSE24824
| Sample_data_row_count | 54675
| |
|
GSM611010 | GPL570 |
|
control treated liver metastasis sample R3
|
Total RNA of control treated liver metastasis
|
treatment: Control
|
|
Sample_geo_accession | GSM611010
| Sample_status | Public on Oct 21 2010
| Sample_submission_date | Oct 20 2010
| Sample_last_update_date | Oct 20 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | In vivo liver metastasis model treated with either anti-miR-182 or control administered intraperitoneal twice weekly over 4 weeks.
| Sample_growth_protocol_ch1 | Human melanoma cells A375 metastatic to liver treated with either control or anti-miR-182 using a mouse model.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy micro-elute columns (QIAGEN), according to manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 100 ng of total cellular RNA was converted to cDNA/cRNA and labeled using the Affymetrix 3'IVT Express Kit.
| Sample_hyb_protocol | 10 micrograms of cRNA generated by the IVT procedure was hybridized for 16 hr to the Affymetrix array according to the manufacturer's manual. Genechips® were processed using protocol EukGE_WS2v4 450 for Genechip® fluidics station 450.
| Sample_scan_protocol | Affymetrix GeneArray scanner 7G
| Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was done by the RMA algorithm using GeneSpring GX11 program. No further adjustments were made to the data in the table.
| Sample_platform_id | GPL570
| Sample_contact_name | Jiri,,Zavadil
| Sample_contact_email | jiri.zavadil@med.nyu.edu
| Sample_contact_phone | 212-263-8048
| Sample_contact_department | Pathology
| Sample_contact_institute | NYU SoM
| Sample_contact_address |
| Sample_contact_city | New York
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 10016
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM611nnn/GSM611010/suppl/GSM611010.CEL.gz
| Sample_series_id | GSE24824
| Sample_data_row_count | 54675
| |
|
GSM611011 | GPL570 |
|
control treated liver metastasis sample R4
|
Total RNA of control treated liver metastasis
|
treatment: Control
|
|
Sample_geo_accession | GSM611011
| Sample_status | Public on Oct 21 2010
| Sample_submission_date | Oct 20 2010
| Sample_last_update_date | Oct 20 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | In vivo liver metastasis model treated with either anti-miR-182 or control administered intraperitoneal twice weekly over 4 weeks.
| Sample_growth_protocol_ch1 | Human melanoma cells A375 metastatic to liver treated with either control or anti-miR-182 using a mouse model.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy micro-elute columns (QIAGEN), according to manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 100 ng of total cellular RNA was converted to cDNA/cRNA and labeled using the Affymetrix 3'IVT Express Kit.
| Sample_hyb_protocol | 10 micrograms of cRNA generated by the IVT procedure was hybridized for 16 hr to the Affymetrix array according to the manufacturer's manual. Genechips® were processed using protocol EukGE_WS2v4 450 for Genechip® fluidics station 450.
| Sample_scan_protocol | Affymetrix GeneArray scanner 7G
| Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was done by the RMA algorithm using GeneSpring GX11 program. No further adjustments were made to the data in the table.
| Sample_platform_id | GPL570
| Sample_contact_name | Jiri,,Zavadil
| Sample_contact_email | jiri.zavadil@med.nyu.edu
| Sample_contact_phone | 212-263-8048
| Sample_contact_department | Pathology
| Sample_contact_institute | NYU SoM
| Sample_contact_address |
| Sample_contact_city | New York
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 10016
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM611nnn/GSM611011/suppl/GSM611011.CEL.gz
| Sample_series_id | GSE24824
| Sample_data_row_count | 54675
| |
|
GSM611012 | GPL570 |
|
anti-miR treated liver metastasis sample R1
|
Total RNA of anti-miR treated metastasis
|
treatment: anti-miR-182
|
|
Sample_geo_accession | GSM611012
| Sample_status | Public on Oct 21 2010
| Sample_submission_date | Oct 20 2010
| Sample_last_update_date | Oct 20 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | In vivo liver metastasis model treated with either anti-miR-182 or control administered intraperitoneal twice weekly over 4 weeks.
| Sample_growth_protocol_ch1 | Human melanoma cells A375 metastatic to liver treated with either control or anti-miR-182 using a mouse model.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy micro-elute columns (QIAGEN), according to manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 100 ng of total cellular RNA was converted to cDNA/cRNA and labeled using the Affymetrix 3'IVT Express Kit.
| Sample_hyb_protocol | 10 micrograms of cRNA generated by the IVT procedure was hybridized for 16 hr to the Affymetrix array according to the manufacturer's manual. Genechips® were processed using protocol EukGE_WS2v4 450 for Genechip® fluidics station 450.
| Sample_scan_protocol | Affymetrix GeneArray scanner 7G
| Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was done by the RMA algorithm using GeneSpring GX11 program. No further adjustments were made to the data in the table.
| Sample_platform_id | GPL570
| Sample_contact_name | Jiri,,Zavadil
| Sample_contact_email | jiri.zavadil@med.nyu.edu
| Sample_contact_phone | 212-263-8048
| Sample_contact_department | Pathology
| Sample_contact_institute | NYU SoM
| Sample_contact_address |
| Sample_contact_city | New York
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 10016
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM611nnn/GSM611012/suppl/GSM611012.CEL.gz
| Sample_series_id | GSE24824
| Sample_data_row_count | 54675
| |
|
GSM611013 | GPL570 |
|
anti-miR treated liver metastasis sample R2
|
Total RNA of anti-miR treated metastasis
|
treatment: anti-miR-182
|
|
Sample_geo_accession | GSM611013
| Sample_status | Public on Oct 21 2010
| Sample_submission_date | Oct 20 2010
| Sample_last_update_date | Oct 20 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | In vivo liver metastasis model treated with either anti-miR-182 or control administered intraperitoneal twice weekly over 4 weeks.
| Sample_growth_protocol_ch1 | Human melanoma cells A375 metastatic to liver treated with either control or anti-miR-182 using a mouse model.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy micro-elute columns (QIAGEN), according to manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 100 ng of total cellular RNA was converted to cDNA/cRNA and labeled using the Affymetrix 3'IVT Express Kit.
| Sample_hyb_protocol | 10 micrograms of cRNA generated by the IVT procedure was hybridized for 16 hr to the Affymetrix array according to the manufacturer's manual. Genechips® were processed using protocol EukGE_WS2v4 450 for Genechip® fluidics station 450.
| Sample_scan_protocol | Affymetrix GeneArray scanner 7G
| Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was done by the RMA algorithm using GeneSpring GX11 program. No further adjustments were made to the data in the table.
| Sample_platform_id | GPL570
| Sample_contact_name | Jiri,,Zavadil
| Sample_contact_email | jiri.zavadil@med.nyu.edu
| Sample_contact_phone | 212-263-8048
| Sample_contact_department | Pathology
| Sample_contact_institute | NYU SoM
| Sample_contact_address |
| Sample_contact_city | New York
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 10016
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM611nnn/GSM611013/suppl/GSM611013.CEL.gz
| Sample_series_id | GSE24824
| Sample_data_row_count | 54675
| |
|
GSM611014 | GPL570 |
|
anti-miR treated liver metastasis sample R3
|
Total RNA of anti-miR treated metastasis
|
treatment: anti-miR-182
|
|
Sample_geo_accession | GSM611014
| Sample_status | Public on Oct 21 2010
| Sample_submission_date | Oct 20 2010
| Sample_last_update_date | Oct 20 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | In vivo liver metastasis model treated with either anti-miR-182 or control administered intraperitoneal twice weekly over 4 weeks.
| Sample_growth_protocol_ch1 | Human melanoma cells A375 metastatic to liver treated with either control or anti-miR-182 using a mouse model.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy micro-elute columns (QIAGEN), according to manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 100 ng of total cellular RNA was converted to cDNA/cRNA and labeled using the Affymetrix 3'IVT Express Kit.
| Sample_hyb_protocol | 10 micrograms of cRNA generated by the IVT procedure was hybridized for 16 hr to the Affymetrix array according to the manufacturer's manual. Genechips® were processed using protocol EukGE_WS2v4 450 for Genechip® fluidics station 450.
| Sample_scan_protocol | Affymetrix GeneArray scanner 7G
| Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was done by the RMA algorithm using GeneSpring GX11 program. No further adjustments were made to the data in the table.
| Sample_platform_id | GPL570
| Sample_contact_name | Jiri,,Zavadil
| Sample_contact_email | jiri.zavadil@med.nyu.edu
| Sample_contact_phone | 212-263-8048
| Sample_contact_department | Pathology
| Sample_contact_institute | NYU SoM
| Sample_contact_address |
| Sample_contact_city | New York
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 10016
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM611nnn/GSM611014/suppl/GSM611014.CEL.gz
| Sample_series_id | GSE24824
| Sample_data_row_count | 54675
| |
|
GSM611015 | GPL570 |
|
anti-miR treated liver metastasis sample R4
|
Total RNA of anti-miR treated metastasis
|
treatment: anti-miR-182
|
|
Sample_geo_accession | GSM611015
| Sample_status | Public on Oct 21 2010
| Sample_submission_date | Oct 20 2010
| Sample_last_update_date | Oct 20 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | In vivo liver metastasis model treated with either anti-miR-182 or control administered intraperitoneal twice weekly over 4 weeks.
| Sample_growth_protocol_ch1 | Human melanoma cells A375 metastatic to liver treated with either control or anti-miR-182 using a mouse model.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using RNeasy micro-elute columns (QIAGEN), according to manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 100 ng of total cellular RNA was converted to cDNA/cRNA and labeled using the Affymetrix 3'IVT Express Kit.
| Sample_hyb_protocol | 10 micrograms of cRNA generated by the IVT procedure was hybridized for 16 hr to the Affymetrix array according to the manufacturer's manual. Genechips® were processed using protocol EukGE_WS2v4 450 for Genechip® fluidics station 450.
| Sample_scan_protocol | Affymetrix GeneArray scanner 7G
| Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was done by the RMA algorithm using GeneSpring GX11 program. No further adjustments were made to the data in the table.
| Sample_platform_id | GPL570
| Sample_contact_name | Jiri,,Zavadil
| Sample_contact_email | jiri.zavadil@med.nyu.edu
| Sample_contact_phone | 212-263-8048
| Sample_contact_department | Pathology
| Sample_contact_institute | NYU SoM
| Sample_contact_address |
| Sample_contact_city | New York
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 10016
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM611nnn/GSM611015/suppl/GSM611015.CEL.gz
| Sample_series_id | GSE24824
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|