Search results for the GEO ID: GSE25012 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM614486 | GPL570 |
|
Sample 1 GBM cells at 4 hours post injection, first experiment
|
human GBM cells after transplantation into zebrafish
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time: 4 hpi first exp
cell type: human GBM cells
microenvironment: zebrafish brain
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Gene expression data from human GBM cells after 4 hours post injection into zebrafish (first experiment)
|
Sample_geo_accession | GSM614486
| Sample_status | Public on Feb 28 2013
| Sample_submission_date | Oct 29 2010
| Sample_last_update_date | Feb 28 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | human GBM cells engrafted into zebrafish brain
| Sample_growth_protocol_ch1 | cells are cultured in DMEM-F12 supplemented with BIT9500 BFGF and EGF
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA using Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix 3'IVT expression kit protocol from 250 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 12,5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | silvia ,,bresolin
| Sample_contact_email | silvia.bresolin@unipd.it
| Sample_contact_phone | +390498211453
| Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| Sample_contact_department | department of pediatrics
| Sample_contact_institute | università di padova
| Sample_contact_address | via giustiniani 3
| Sample_contact_city | padova
| Sample_contact_state | padova
| Sample_contact_zip/postal_code | 35128
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM614nnn/GSM614486/suppl/GSM614486_Z3_2_HG-U133_Plus_2_.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM614nnn/GSM614486/suppl/GSM614486_Z3_2_HG-U133_Plus_2_.mas5.CHP.gz
| Sample_series_id | GSE25012
| Sample_data_row_count | 54675
| |
|
GSM614487 | GPL570 |
|
Sample 2 GBM cells at 24 hours post injection, first experiment
|
human GBM cells after transplantation into zebrafish
|
time: 24 hpi first exp
cell type: human GBM cells
microenvironment: zebrafish brain
|
Gene expression data from human GBM cells after 24 hours post injection into zebrafish (first experiment)
|
Sample_geo_accession | GSM614487
| Sample_status | Public on Feb 28 2013
| Sample_submission_date | Oct 29 2010
| Sample_last_update_date | Feb 28 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | human GBM cells engrafted into zebrafish brain
| Sample_growth_protocol_ch1 | cells are cultured in DMEM-F12 supplemented with BIT9500 BFGF and EGF
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA using Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix 3'IVT expression kit protocol from 250 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 12,5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | silvia ,,bresolin
| Sample_contact_email | silvia.bresolin@unipd.it
| Sample_contact_phone | +390498211453
| Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| Sample_contact_department | department of pediatrics
| Sample_contact_institute | università di padova
| Sample_contact_address | via giustiniani 3
| Sample_contact_city | padova
| Sample_contact_state | padova
| Sample_contact_zip/postal_code | 35128
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM614nnn/GSM614487/suppl/GSM614487_Z4_2_HG-U133_Plus_2_.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM614nnn/GSM614487/suppl/GSM614487_Z4_2_HG-U133_Plus_2_.mas5.CHP.gz
| Sample_series_id | GSE25012
| Sample_data_row_count | 54675
| |
|
GSM614488 | GPL570 |
|
Sample 3 GBM cells at 48 hours post injection, first experiment
|
human GBM cells after transplantation into zebrafish
|
time: 48 hpi first exp
cell type: human GBM cells
microenvironment: zebrafish brain
|
Gene expression data from human GBM cells after 48 hours post injection into zebrafish (first experiment)
|
Sample_geo_accession | GSM614488
| Sample_status | Public on Feb 28 2013
| Sample_submission_date | Oct 29 2010
| Sample_last_update_date | Feb 28 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | human GBM cells engrafted into zebrafish brain
| Sample_growth_protocol_ch1 | cells are cultured in DMEM-F12 supplemented with BIT9500 BFGF and EGF
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA using Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix 3'IVT expression kit protocol from 250 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 12,5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | silvia ,,bresolin
| Sample_contact_email | silvia.bresolin@unipd.it
| Sample_contact_phone | +390498211453
| Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| Sample_contact_department | department of pediatrics
| Sample_contact_institute | università di padova
| Sample_contact_address | via giustiniani 3
| Sample_contact_city | padova
| Sample_contact_state | padova
| Sample_contact_zip/postal_code | 35128
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM614nnn/GSM614488/suppl/GSM614488_Z5_2_HG-U133_Plus_2_.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM614nnn/GSM614488/suppl/GSM614488_Z5_2_HG-U133_Plus_2_.mas5.CHP.gz
| Sample_series_id | GSE25012
| Sample_data_row_count | 54675
| |
|
GSM614489 | GPL570 |
|
Sample 4 GBM cells at 4 hours post injection, second experiment
|
human GBM cells after transplantation into zebrafish
|
time: 4 hpi second exp
cell type: human GBM cells
microenvironment: zebrafish brain
|
Gene expression data from human GBM cells after 4 hours post injection into zebrafish (second experiment)
|
Sample_geo_accession | GSM614489
| Sample_status | Public on Feb 28 2013
| Sample_submission_date | Oct 29 2010
| Sample_last_update_date | Feb 28 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | human GBM cells engrafted into zebrafish brain
| Sample_growth_protocol_ch1 | cells are cultured in DMEM-F12 supplemented with BIT9500 BFGF and EGF
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA using Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix 3'IVT expression kit protocol from 250 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 12,5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | silvia ,,bresolin
| Sample_contact_email | silvia.bresolin@unipd.it
| Sample_contact_phone | +390498211453
| Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| Sample_contact_department | department of pediatrics
| Sample_contact_institute | università di padova
| Sample_contact_address | via giustiniani 3
| Sample_contact_city | padova
| Sample_contact_state | padova
| Sample_contact_zip/postal_code | 35128
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM614nnn/GSM614489/suppl/GSM614489_Z6_HG-U133_Plus_2_.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM614nnn/GSM614489/suppl/GSM614489_Z6_HG-U133_Plus_2_.mas5.CHP.gz
| Sample_series_id | GSE25012
| Sample_data_row_count | 54675
| |
|
GSM614490 | GPL570 |
|
Sample 5 GBM cells at 24 hours post injection, second experiment
|
human GBM cells after transplantation into zebrafish
|
time: 24 hpi second exp
cell type: human GBM cells
microenvironment: zebrafish brain
|
Gene expression data from human GBM cells after 24 hours post injection into zebrafish (second experiment)
|
Sample_geo_accession | GSM614490
| Sample_status | Public on Feb 28 2013
| Sample_submission_date | Oct 29 2010
| Sample_last_update_date | Feb 28 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | human GBM cells engrafted into zebrafish brain
| Sample_growth_protocol_ch1 | cells are cultured in DMEM-F12 supplemented with BIT9500 BFGF and EGF
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA using Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix 3'IVT expression kit protocol from 250 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 12,5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | silvia ,,bresolin
| Sample_contact_email | silvia.bresolin@unipd.it
| Sample_contact_phone | +390498211453
| Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| Sample_contact_department | department of pediatrics
| Sample_contact_institute | università di padova
| Sample_contact_address | via giustiniani 3
| Sample_contact_city | padova
| Sample_contact_state | padova
| Sample_contact_zip/postal_code | 35128
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM614nnn/GSM614490/suppl/GSM614490_Z7_HG-U133_Plus_2_.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM614nnn/GSM614490/suppl/GSM614490_Z7_HG-U133_Plus_2_.mas5.CHP.gz
| Sample_series_id | GSE25012
| Sample_data_row_count | 54675
| |
|
GSM614491 | GPL570 |
|
Sample 6 GBM cells at 48 hours post injection, second experiment
|
human GBM cells after transplantation into zebrafish
|
time: 48 hpi second exp
cell type: human GBM cells
microenvironment: zebrafish brain
|
Gene expression data from human GBM cells after 48 hours post injection into zebrafish (second experiment)
|
Sample_geo_accession | GSM614491
| Sample_status | Public on Feb 28 2013
| Sample_submission_date | Oct 29 2010
| Sample_last_update_date | Feb 28 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | human GBM cells engrafted into zebrafish brain
| Sample_growth_protocol_ch1 | cells are cultured in DMEM-F12 supplemented with BIT9500 BFGF and EGF
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA using Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix 3'IVT expression kit protocol from 250 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 12,5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Scan GC3000 7G
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | silvia ,,bresolin
| Sample_contact_email | silvia.bresolin@unipd.it
| Sample_contact_phone | +390498211453
| Sample_contact_laboratory | SSD ematologia-clinica sperimentale
| Sample_contact_department | department of pediatrics
| Sample_contact_institute | università di padova
| Sample_contact_address | via giustiniani 3
| Sample_contact_city | padova
| Sample_contact_state | padova
| Sample_contact_zip/postal_code | 35128
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM614nnn/GSM614491/suppl/GSM614491_Z8_HG-U133_Plus_2_.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM614nnn/GSM614491/suppl/GSM614491_Z8_HG-U133_Plus_2_.mas5.CHP.gz
| Sample_series_id | GSE25012
| Sample_data_row_count | 54675
| |
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