Search results for the GEO ID: GSE2515  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM47956 | GPL339 |
|
566.B6
|
mouse
|
|
KO vs B6
|
| Sample_geo_accession | GSM47956
| | Sample_status | Public on Apr 11 2006
| | Sample_submission_date | Apr 08 2005
| | Sample_last_update_date | May 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ratanmani,,Joshi
| | Sample_contact_email | rjoshi@mail.mcg.edu
| | Sample_contact_phone | 706-721-8861
| | Sample_contact_fax | 706-721-7672
| | Sample_contact_laboratory | Genomics Core Facility
| | Sample_contact_department | Genomics
| | Sample_contact_institute | Center for Biotechnology and Genomic Medicine
| | Sample_contact_address | Laney Walker Blvd
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.mcg.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM47nnn/GSM47956/suppl/GSM47956.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM47nnn/GSM47956/suppl/GSM47956.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM47nnn/GSM47956/suppl/GSM47956.RPT.gz
| | Sample_series_id | GSE2515
| | Sample_data_row_count | 22690
| | |
|
GSM48038 | GPL339 |
|
567.KO
|
mouse
|
|
TEC B6 vs Aire KO
|
| Sample_geo_accession | GSM48038
| | Sample_status | Public on Apr 11 2006
| | Sample_submission_date | Apr 11 2005
| | Sample_last_update_date | May 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ratanmani,,Joshi
| | Sample_contact_email | rjoshi@mail.mcg.edu
| | Sample_contact_phone | 706-721-8861
| | Sample_contact_fax | 706-721-7672
| | Sample_contact_laboratory | Genomics Core Facility
| | Sample_contact_department | Genomics
| | Sample_contact_institute | Center for Biotechnology and Genomic Medicine
| | Sample_contact_address | Laney Walker Blvd
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.mcg.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48038/suppl/GSM48038.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48038/suppl/GSM48038.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48038/suppl/GSM48038.RPT.gz
| | Sample_series_id | GSE2515
| | Sample_data_row_count | 22690
| | |
|
GSM48039 | GPL339 |
|
568.B6
|
mouse
|
|
TEC B6 vs Aire KO
|
| Sample_geo_accession | GSM48039
| | Sample_status | Public on Apr 11 2006
| | Sample_submission_date | Apr 11 2005
| | Sample_last_update_date | May 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ratanmani,,Joshi
| | Sample_contact_email | rjoshi@mail.mcg.edu
| | Sample_contact_phone | 706-721-8861
| | Sample_contact_fax | 706-721-7672
| | Sample_contact_laboratory | Genomics Core Facility
| | Sample_contact_department | Genomics
| | Sample_contact_institute | Center for Biotechnology and Genomic Medicine
| | Sample_contact_address | Laney Walker Blvd
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.mcg.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48039/suppl/GSM48039.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48039/suppl/GSM48039.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48039/suppl/GSM48039.RPT.gz
| | Sample_series_id | GSE2515
| | Sample_data_row_count | 22690
| | |
|
GSM48041 | GPL339 |
|
569.KO
|
mouse
|
|
TEC B6 vs Aire KO
|
| Sample_geo_accession | GSM48041
| | Sample_status | Public on Apr 11 2006
| | Sample_submission_date | Apr 11 2005
| | Sample_last_update_date | May 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ratanmani,,Joshi
| | Sample_contact_email | rjoshi@mail.mcg.edu
| | Sample_contact_phone | 706-721-8861
| | Sample_contact_fax | 706-721-7672
| | Sample_contact_laboratory | Genomics Core Facility
| | Sample_contact_department | Genomics
| | Sample_contact_institute | Center for Biotechnology and Genomic Medicine
| | Sample_contact_address | Laney Walker Blvd
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.mcg.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48041/suppl/GSM48041.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48041/suppl/GSM48041.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48041/suppl/GSM48041.RPT.gz
| | Sample_series_id | GSE2515
| | Sample_data_row_count | 22690
| | |
|
GSM48042 | GPL339 |
|
570.B6
|
mouse
|
|
TEC B6 vs Aire KO
|
| Sample_geo_accession | GSM48042
| | Sample_status | Public on Apr 11 2006
| | Sample_submission_date | Apr 11 2005
| | Sample_last_update_date | May 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ratanmani,,Joshi
| | Sample_contact_email | rjoshi@mail.mcg.edu
| | Sample_contact_phone | 706-721-8861
| | Sample_contact_fax | 706-721-7672
| | Sample_contact_laboratory | Genomics Core Facility
| | Sample_contact_department | Genomics
| | Sample_contact_institute | Center for Biotechnology and Genomic Medicine
| | Sample_contact_address | Laney Walker Blvd
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.mcg.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48042/suppl/GSM48042.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48042/suppl/GSM48042.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48042/suppl/GSM48042.RPT.gz
| | Sample_series_id | GSE2515
| | Sample_data_row_count | 22690
| | |
|
GSM48044 | GPL339 |
|
571.KO
|
mouse
|
|
TEC B6 vs Aire KO
|
| Sample_geo_accession | GSM48044
| | Sample_status | Public on Apr 11 2006
| | Sample_submission_date | Apr 11 2005
| | Sample_last_update_date | May 29 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ratanmani,,Joshi
| | Sample_contact_email | rjoshi@mail.mcg.edu
| | Sample_contact_phone | 706-721-8861
| | Sample_contact_fax | 706-721-7672
| | Sample_contact_laboratory | Genomics Core Facility
| | Sample_contact_department | Genomics
| | Sample_contact_institute | Center for Biotechnology and Genomic Medicine
| | Sample_contact_address | Laney Walker Blvd
| | Sample_contact_city | Augusta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30912
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.mcg.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48044/suppl/GSM48044.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48044/suppl/GSM48044.EXP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM48nnn/GSM48044/suppl/GSM48044.RPT.gz
| | Sample_series_id | GSE2515
| | Sample_data_row_count | 22690
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
| Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
| Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
| |
Filter results by number of probes |
|
|
