Search results for the GEO ID: GSE25162  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM618185 | GPL570 |
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MCF7 cells overexpressing miR-210-rep1
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MCF7 cells overexpressing miR-210
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cell line: MCF7
estrogen-receptor status: ER-positive
genotype/variation: miR-210 overexpression
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MCF7_miR210_1
Gene expression data from MCF7 cells overexpressing miR-210
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| Sample_geo_accession | GSM618185
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 05 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7 and MDA-MB-231 cells were obtained from the ATCC and cultured under standard conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome Array (U133Plus2.0). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS Manager 4.0 using Affymetrix default analysis settings. The data were RMA-normalized and log2 transformed using BRB Array Tools software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Françoise,,Rothé
| | Sample_contact_laboratory | Breast cancer translational research laboratory
| | Sample_contact_institute | Jules Bordet Institute
| | Sample_contact_address | boulevard de waterloo 127
| | Sample_contact_city | brussels
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM618nnn/GSM618185/suppl/GSM618185.CEL.gz
| | Sample_series_id | GSE25162
| | Sample_data_row_count | 54675
| | |
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GSM618186 | GPL570 |
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MCF7 cells overexpressing miR-210-rep2
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MCF7 cells overexpressing miR-210
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cell line: MCF7
estrogen-receptor status: ER-positive
genotype/variation: miR-210 overexpression
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MCF7_miR210_2
Gene expression data from MCF7 cells overexpressing miR-210
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| Sample_geo_accession | GSM618186
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 05 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7 and MDA-MB-231 cells were obtained from the ATCC and cultured under standard conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome Array (U133Plus2.0). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS Manager 4.0 using Affymetrix default analysis settings. The data were RMA-normalized and log2 transformed using BRB Array Tools software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Françoise,,Rothé
| | Sample_contact_laboratory | Breast cancer translational research laboratory
| | Sample_contact_institute | Jules Bordet Institute
| | Sample_contact_address | boulevard de waterloo 127
| | Sample_contact_city | brussels
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM618nnn/GSM618186/suppl/GSM618186.CEL.gz
| | Sample_series_id | GSE25162
| | Sample_data_row_count | 54675
| | |
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GSM618187 | GPL570 |
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MCF7 cells overexpressing a scramble sequence-rep1
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MCF7 cells overexpressing a scramble sequence (negative control)
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cell line: MCF7
estrogen-receptor status: ER-positive
genotype/variation: control (for miR-210 overexpression)
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MCF7_mircontrol_1
Gene expression data from MCF7 control cells
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| Sample_geo_accession | GSM618187
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 05 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7 and MDA-MB-231 cells were obtained from the ATCC and cultured under standard conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome Array (U133Plus2.0). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS Manager 4.0 using Affymetrix default analysis settings. The data were RMA-normalized and log2 transformed using BRB Array Tools software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Françoise,,Rothé
| | Sample_contact_laboratory | Breast cancer translational research laboratory
| | Sample_contact_institute | Jules Bordet Institute
| | Sample_contact_address | boulevard de waterloo 127
| | Sample_contact_city | brussels
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM618nnn/GSM618187/suppl/GSM618187.CEL.gz
| | Sample_series_id | GSE25162
| | Sample_data_row_count | 54675
| | |
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GSM618188 | GPL570 |
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MCF7 cells overexpressing a scramble sequence-rep2
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MCF7 cells overexpressing a scramble sequence (negative control)
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cell line: MCF7
estrogen-receptor status: ER-positive
genotype/variation: control (for miR-210 overexpression)
|
MCF7_mircontrol_2
Gene expression data from MCF7 control cells
|
| Sample_geo_accession | GSM618188
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 05 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7 and MDA-MB-231 cells were obtained from the ATCC and cultured under standard conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome Array (U133Plus2.0). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS Manager 4.0 using Affymetrix default analysis settings. The data were RMA-normalized and log2 transformed using BRB Array Tools software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Françoise,,Rothé
| | Sample_contact_laboratory | Breast cancer translational research laboratory
| | Sample_contact_institute | Jules Bordet Institute
| | Sample_contact_address | boulevard de waterloo 127
| | Sample_contact_city | brussels
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM618nnn/GSM618188/suppl/GSM618188.CEL.gz
| | Sample_series_id | GSE25162
| | Sample_data_row_count | 54675
| | |
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GSM618189 | GPL570 |
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MDA-MB-231 cells repressing miR-210-rep1
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MDA-MB-231 cells repressing miR-210
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cell line: MDA-MB-231
estrogen-receptor status: ER-negative
genotype/variation: miR-210 repression
|
MDAMB231_miR210_1
Gene expression data from MDA-MB-231 cells repressing miR-210
|
| Sample_geo_accession | GSM618189
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 05 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7 and MDA-MB-231 cells were obtained from the ATCC and cultured under standard conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome Array (U133Plus2.0). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS Manager 4.0 using Affymetrix default analysis settings. The data were RMA-normalized and log2 transformed using BRB Array Tools software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Françoise,,Rothé
| | Sample_contact_laboratory | Breast cancer translational research laboratory
| | Sample_contact_institute | Jules Bordet Institute
| | Sample_contact_address | boulevard de waterloo 127
| | Sample_contact_city | brussels
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM618nnn/GSM618189/suppl/GSM618189.CEL.gz
| | Sample_series_id | GSE25162
| | Sample_data_row_count | 54675
| | |
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GSM618190 | GPL570 |
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MDA-MB-231 cells repressing miR-210-rep2
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MDA-MB-231 cells repressing miR-210
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cell line: MDA-MB-231
estrogen-receptor status: ER-negative
genotype/variation: miR-210 repression
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MDAMB231_miR210_2
Gene expression data from MDA-MB-231 cells repressing miR-210
|
| Sample_geo_accession | GSM618190
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 05 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7 and MDA-MB-231 cells were obtained from the ATCC and cultured under standard conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome Array (U133Plus2.0). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS Manager 4.0 using Affymetrix default analysis settings. The data were RMA-normalized and log2 transformed using BRB Array Tools software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Françoise,,Rothé
| | Sample_contact_laboratory | Breast cancer translational research laboratory
| | Sample_contact_institute | Jules Bordet Institute
| | Sample_contact_address | boulevard de waterloo 127
| | Sample_contact_city | brussels
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM618nnn/GSM618190/suppl/GSM618190.CEL.gz
| | Sample_series_id | GSE25162
| | Sample_data_row_count | 54675
| | |
|
GSM618191 | GPL570 |
|
MDA-MB-231 cells repressing a scramble sequence-rep1
|
MDA-MB-231 cells repressing a scramble sequence (negative control)
|
cell line: MDA-MB-231
estrogen-receptor status: ER-negative
genotype/variation: control (for miR-210 repression)
|
MDAMB231_mircontrol_1
Gene expression data from MDA-MB-231 control cells
|
| Sample_geo_accession | GSM618191
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 05 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7 and MDA-MB-231 cells were obtained from the ATCC and cultured under standard conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome Array (U133Plus2.0). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS Manager 4.0 using Affymetrix default analysis settings. The data were RMA-normalized and log2 transformed using BRB Array Tools software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Françoise,,Rothé
| | Sample_contact_laboratory | Breast cancer translational research laboratory
| | Sample_contact_institute | Jules Bordet Institute
| | Sample_contact_address | boulevard de waterloo 127
| | Sample_contact_city | brussels
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM618nnn/GSM618191/suppl/GSM618191.CEL.gz
| | Sample_series_id | GSE25162
| | Sample_data_row_count | 54675
| | |
|
GSM618192 | GPL570 |
|
MDA-MB-231 cells repressing a scramble sequence-rep2
|
MDA-MB-231 cells repressing a scramble sequence (negative control)
|
cell line: MDA-MB-231
estrogen-receptor status: ER-negative
genotype/variation: control (for miR-210 repression)
|
MDAMB231_mircontrol_2
Gene expression data from MDA-MB-231 control cells
|
| Sample_geo_accession | GSM618192
| | Sample_status | Public on Jul 01 2011
| | Sample_submission_date | Nov 05 2010
| | Sample_last_update_date | Jul 01 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | MCF7 and MDA-MB-231 cells were obtained from the ATCC and cultured under standard conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome Array (U133Plus2.0). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS Manager 4.0 using Affymetrix default analysis settings. The data were RMA-normalized and log2 transformed using BRB Array Tools software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Françoise,,Rothé
| | Sample_contact_laboratory | Breast cancer translational research laboratory
| | Sample_contact_institute | Jules Bordet Institute
| | Sample_contact_address | boulevard de waterloo 127
| | Sample_contact_city | brussels
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM618nnn/GSM618192/suppl/GSM618192.CEL.gz
| | Sample_series_id | GSE25162
| | Sample_data_row_count | 54675
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