Search results for the GEO ID: GSE25196  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM619101 | GPL1355 |
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G20RatTestis_Oil_Rep1
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GD20RatTestis_CornOil_GD12to20
|
gender: Male
strain: Fischer 344
age: gestational day 20
exposure: corn oil
dibutyl phthalate dose level: 0
bioanalyzer rna integrity number: 8.7
tissue: testis
|
Dam was exposed daily via oral gavage from GD12 to 20 to 1 ml corn oil/kg body weight. Six hours after the final exposure, tissue was harvested.
|
| Sample_geo_accession | GSM619101
| | Sample_status | Public on Apr 25 2011
| | Sample_submission_date | Nov 08 2010
| | Sample_last_update_date | Apr 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Beginning on gestational day (GD) 12 and ending on GD20, dams were exposed once per day via oral gavage. Testes were harvested six hours after the final exposure and snap frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Testes were extracted with TRIzol reagent (Invitrogen) and total RNA purifed using an RNeasy Micro kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 1 ug total RNA using an Affymetrix One Cycle Target Labeling and Control Reagents kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of labeled cRNA was hybridized for 16 hours at 45C on a GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in a Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Affymetrix GeneChip Scanner 3000 7
| | Sample_data_processing | Summarized probeset data were generated using Robust MultiChip Average (RMA) method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Kamin,J,Johnson
| | Sample_contact_department | Nemours Biomedical Research
| | Sample_contact_institute | Alfred I. duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM619nnn/GSM619101/suppl/GSM619101.CEL.gz
| | Sample_series_id | GSE25196
| | Sample_data_row_count | 31099
| | |
|
GSM619102 | GPL1355 |
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G20RatTestis_Oil_Rep2
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GD20RatTestis_CornOil_GD12to20
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gender: Male
strain: Fischer 344
age: gestational day 20
exposure: corn oil
dibutyl phthalate dose level: 0
bioanalyzer rna integrity number: 8.8
tissue: testis
|
Dam was exposed daily via oral gavage from GD12 to 20 to 1 ml corn oil/kg body weight. Six hours after the final exposure, tissue was harvested.
|
| Sample_geo_accession | GSM619102
| | Sample_status | Public on Apr 25 2011
| | Sample_submission_date | Nov 08 2010
| | Sample_last_update_date | Apr 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Beginning on gestational day (GD) 12 and ending on GD20, dams were exposed once per day via oral gavage. Testes were harvested six hours after the final exposure and snap frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Testes were extracted with TRIzol reagent (Invitrogen) and total RNA purifed using an RNeasy Micro kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 1 ug total RNA using an Affymetrix One Cycle Target Labeling and Control Reagents kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of labeled cRNA was hybridized for 16 hours at 45C on a GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in a Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Affymetrix GeneChip Scanner 3000 7
| | Sample_data_processing | Summarized probeset data were generated using Robust MultiChip Average (RMA) method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Kamin,J,Johnson
| | Sample_contact_department | Nemours Biomedical Research
| | Sample_contact_institute | Alfred I. duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM619nnn/GSM619102/suppl/GSM619102.CEL.gz
| | Sample_series_id | GSE25196
| | Sample_data_row_count | 31099
| | |
|
GSM619103 | GPL1355 |
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G20RatTestis_Oil_Rep3
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GD20RatTestis_CornOil_GD12to20
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gender: Male
strain: Fischer 344
age: gestational day 20
exposure: corn oil
dibutyl phthalate dose level: 0
bioanalyzer rna integrity number: 8.7
tissue: testis
|
Dam was exposed daily via oral gavage from GD12 to 20 to 1 ml corn oil/kg body weight. Six hours after the final exposure, tissue was harvested.
|
| Sample_geo_accession | GSM619103
| | Sample_status | Public on Apr 25 2011
| | Sample_submission_date | Nov 08 2010
| | Sample_last_update_date | Apr 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Beginning on gestational day (GD) 12 and ending on GD20, dams were exposed once per day via oral gavage. Testes were harvested six hours after the final exposure and snap frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Testes were extracted with TRIzol reagent (Invitrogen) and total RNA purifed using an RNeasy Micro kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 1 ug total RNA using an Affymetrix One Cycle Target Labeling and Control Reagents kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of labeled cRNA was hybridized for 16 hours at 45C on a GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in a Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Affymetrix GeneChip Scanner 3000 7
| | Sample_data_processing | Summarized probeset data were generated using Robust MultiChip Average (RMA) method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Kamin,J,Johnson
| | Sample_contact_department | Nemours Biomedical Research
| | Sample_contact_institute | Alfred I. duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM619nnn/GSM619103/suppl/GSM619103.CEL.gz
| | Sample_series_id | GSE25196
| | Sample_data_row_count | 31099
| | |
|
GSM619104 | GPL1355 |
|
G20RatTestis_Oil_Rep4
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GD20RatTestis_CornOil_GD12to20
|
gender: Male
strain: Fischer 344
age: gestational day 20
exposure: corn oil
dibutyl phthalate dose level: 0
bioanalyzer rna integrity number: 8.8
tissue: testis
|
Dam was exposed daily via oral gavage from GD12 to 20 to 1 ml corn oil/kg body weight. Six hours after the final exposure, tissue was harvested.
|
| Sample_geo_accession | GSM619104
| | Sample_status | Public on Apr 25 2011
| | Sample_submission_date | Nov 08 2010
| | Sample_last_update_date | Apr 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Beginning on gestational day (GD) 12 and ending on GD20, dams were exposed once per day via oral gavage. Testes were harvested six hours after the final exposure and snap frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Testes were extracted with TRIzol reagent (Invitrogen) and total RNA purifed using an RNeasy Micro kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 1 ug total RNA using an Affymetrix One Cycle Target Labeling and Control Reagents kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of labeled cRNA was hybridized for 16 hours at 45C on a GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in a Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Affymetrix GeneChip Scanner 3000 7
| | Sample_data_processing | Summarized probeset data were generated using Robust MultiChip Average (RMA) method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Kamin,J,Johnson
| | Sample_contact_department | Nemours Biomedical Research
| | Sample_contact_institute | Alfred I. duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM619nnn/GSM619104/suppl/GSM619104.CEL.gz
| | Sample_series_id | GSE25196
| | Sample_data_row_count | 31099
| | |
|
GSM619105 | GPL1355 |
|
G20RatTestis_DBP50_Rep1
|
GD20RatTestis_50 mg/kg DBP_GD12to20
|
gender: Male
strain: Fischer 344
age: gestational day 20
exposure: dibutyl phthalate
dibutyl phthalate dose level: 50 mg/kg (body weight)
bioanalyzer rna integrity number: 8.7
tissue: testis
|
Dam was exposed daily via oral gavage from GD12 to 20 with 50 mg/kg (body weight) dibutyl phthalate (DBP). DBP mixed with corn oil vehicle, and a volume of 1 ml mixture/kg body weight was administered. Six hours after the final exposure, tissue was harvested.
|
| Sample_geo_accession | GSM619105
| | Sample_status | Public on Apr 25 2011
| | Sample_submission_date | Nov 08 2010
| | Sample_last_update_date | Apr 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Beginning on gestational day (GD) 12 and ending on GD20, dams were exposed once per day via oral gavage. Testes were harvested six hours after the final exposure and snap frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Testes were extracted with TRIzol reagent (Invitrogen) and total RNA purifed using an RNeasy Micro kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 1 ug total RNA using an Affymetrix One Cycle Target Labeling and Control Reagents kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of labeled cRNA was hybridized for 16 hours at 45C on a GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in a Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Affymetrix GeneChip Scanner 3000 7
| | Sample_data_processing | Summarized probeset data were generated using Robust MultiChip Average (RMA) method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Kamin,J,Johnson
| | Sample_contact_department | Nemours Biomedical Research
| | Sample_contact_institute | Alfred I. duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM619nnn/GSM619105/suppl/GSM619105.CEL.gz
| | Sample_series_id | GSE25196
| | Sample_data_row_count | 31099
| | |
|
GSM619106 | GPL1355 |
|
G20RatTestis_DBP50_Rep2
|
GD20RatTestis_50 mg/kg DBP_GD12to20
|
gender: Male
strain: Fischer 344
age: gestational day 20
exposure: dibutyl phthalate
dibutyl phthalate dose level: 50 mg/kg (body weight)
bioanalyzer rna integrity number: 8.8
tissue: testis
|
Dam was exposed daily via oral gavage from GD12 to 20 with 50 mg/kg (body weight) dibutyl phthalate (DBP). DBP mixed with corn oil vehicle, and a volume of 1 ml mixture/kg body weight was administered. Six hours after the final exposure, tissue was harvested.
|
| Sample_geo_accession | GSM619106
| | Sample_status | Public on Apr 25 2011
| | Sample_submission_date | Nov 08 2010
| | Sample_last_update_date | Apr 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Beginning on gestational day (GD) 12 and ending on GD20, dams were exposed once per day via oral gavage. Testes were harvested six hours after the final exposure and snap frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Testes were extracted with TRIzol reagent (Invitrogen) and total RNA purifed using an RNeasy Micro kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 1 ug total RNA using an Affymetrix One Cycle Target Labeling and Control Reagents kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of labeled cRNA was hybridized for 16 hours at 45C on a GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in a Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Affymetrix GeneChip Scanner 3000 7
| | Sample_data_processing | Summarized probeset data were generated using Robust MultiChip Average (RMA) method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Kamin,J,Johnson
| | Sample_contact_department | Nemours Biomedical Research
| | Sample_contact_institute | Alfred I. duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM619nnn/GSM619106/suppl/GSM619106.CEL.gz
| | Sample_series_id | GSE25196
| | Sample_data_row_count | 31099
| | |
|
GSM619107 | GPL1355 |
|
G20RatTestis_DBP50_Rep3
|
GD20RatTestis_50 mg/kg DBP_GD12to20
|
gender: Male
strain: Fischer 344
age: gestational day 20
exposure: dibutyl phthalate
dibutyl phthalate dose level: 50 mg/kg (body weight)
bioanalyzer rna integrity number: 8.6
tissue: testis
|
Dam was exposed daily via oral gavage from GD12 to 20 with 50 mg/kg (body weight) dibutyl phthalate (DBP). DBP mixed with corn oil vehicle, and a volume of 1 ml mixture/kg body weight was administered. Six hours after the final exposure, tissue was harvested.
|
| Sample_geo_accession | GSM619107
| | Sample_status | Public on Apr 25 2011
| | Sample_submission_date | Nov 08 2010
| | Sample_last_update_date | Apr 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Beginning on gestational day (GD) 12 and ending on GD20, dams were exposed once per day via oral gavage. Testes were harvested six hours after the final exposure and snap frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Testes were extracted with TRIzol reagent (Invitrogen) and total RNA purifed using an RNeasy Micro kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 1 ug total RNA using an Affymetrix One Cycle Target Labeling and Control Reagents kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of labeled cRNA was hybridized for 16 hours at 45C on a GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in a Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Affymetrix GeneChip Scanner 3000 7
| | Sample_data_processing | Summarized probeset data were generated using Robust MultiChip Average (RMA) method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Kamin,J,Johnson
| | Sample_contact_department | Nemours Biomedical Research
| | Sample_contact_institute | Alfred I. duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM619nnn/GSM619107/suppl/GSM619107.CEL.gz
| | Sample_series_id | GSE25196
| | Sample_data_row_count | 31099
| | |
|
GSM619108 | GPL1355 |
|
G20RatTestis_DBP50_Rep4
|
GD20RatTestis_50 mg/kg DBP_GD12to20
|
gender: Male
strain: Fischer 344
age: gestational day 20
exposure: dibutyl phthalate
dibutyl phthalate dose level: 50 mg/kg (body weight)
bioanalyzer rna integrity number: 8.7
tissue: testis
|
Dam was exposed daily via oral gavage from GD12 to 20 with 50 mg/kg (body weight) dibutyl phthalate (DBP). DBP mixed with corn oil vehicle, and a volume of 1 ml mixture/kg body weight was administered. Six hours after the final exposure, tissue was harvested.
|
| Sample_geo_accession | GSM619108
| | Sample_status | Public on Apr 25 2011
| | Sample_submission_date | Nov 08 2010
| | Sample_last_update_date | Apr 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Beginning on gestational day (GD) 12 and ending on GD20, dams were exposed once per day via oral gavage. Testes were harvested six hours after the final exposure and snap frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Testes were extracted with TRIzol reagent (Invitrogen) and total RNA purifed using an RNeasy Micro kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 1 ug total RNA using an Affymetrix One Cycle Target Labeling and Control Reagents kit according to the manufacturer's protocol.
| | Sample_hyb_protocol | Following fragmentation, 15 ug of labeled cRNA was hybridized for 16 hours at 45C on a GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in a Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Affymetrix GeneChip Scanner 3000 7
| | Sample_data_processing | Summarized probeset data were generated using Robust MultiChip Average (RMA) method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Kamin,J,Johnson
| | Sample_contact_department | Nemours Biomedical Research
| | Sample_contact_institute | Alfred I. duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM619nnn/GSM619108/suppl/GSM619108.CEL.gz
| | Sample_series_id | GSE25196
| | Sample_data_row_count | 31099
| | |
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